Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens

Table 4 Number of protein-coding genes annotated in each functional category

Species	Total proteins¹	Secreted CAZymes	Secondary metabolism²	P450s	Peroxidases	Transporters	PHI-base³
Dia. ampelina	10,801 (1136)	432	411	177	57	1,230	1,352
Dip. seriata	9,398 (910)	335	142	122	53	1,345	1,120
P. chlamydospora	6,986 (410)	142	152	47	33	1,108	913
E. lata	11,818 (1224)	484	382	205	51	1,381	1,448
T. minima	11,591 (880)	303	118	119	48	1,686	1,389
N. parvum	10,470 (1097)	413	353	212	54	1,526	1,384
F. mediterranea	11,338 (815)	293	185	127	52	1,171	1,168
S. hirsutum	14,066 (1116)	401	279	214	52	1,257	1,288
B. cinerea	16,410 (993)	287	464	124	49	1,217	1,326
S. cerevisiae	6,717 (377)	65	13	3	22	879	691

¹Values in parentheses correspond to predicted secreted proteins
²Number of genes inside secondary metabolism clusters. Genes from the class “others” are not included in the count
³Annotations based on genetic perturbations resulting in reduction of virulence or pathogenicity

ISSN: 1471-2164