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Table 4 Number of protein-coding genes annotated in each functional category

From: Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens

Species Total proteins1 Secreted CAZymes Secondary metabolism2 P450s Peroxidases Transporters PHI-base3
Dia. ampelina 10,801 (1136) 432 411 177 57 1,230 1,352
Dip. seriata 9,398 (910) 335 142 122 53 1,345 1,120
P. chlamydospora 6,986 (410) 142 152 47 33 1,108 913
E. lata 11,818 (1224) 484 382 205 51 1,381 1,448
T. minima 11,591 (880) 303 118 119 48 1,686 1,389
N. parvum 10,470 (1097) 413 353 212 54 1,526 1,384
F. mediterranea 11,338 (815) 293 185 127 52 1,171 1,168
S. hirsutum 14,066 (1116) 401 279 214 52 1,257 1,288
B. cinerea 16,410 (993) 287 464 124 49 1,217 1,326
S. cerevisiae 6,717 (377) 65 13 3 22 879 691
  1. 1Values in parentheses correspond to predicted secreted proteins
  2. 2Number of genes inside secondary metabolism clusters. Genes from the class “others” are not included in the count
  3. 3Annotations based on genetic perturbations resulting in reduction of virulence or pathogenicity