Skip to main content

Table 1 Changes in abundance of transcripts involved in chorismate, auxin and strigolactone biosynthesis/signaling

From: Glyphosate’s impact on vegetative growth in leafy spurge identifies molecular processes and hormone cross-talk associated with increased branching

Category

Gene ID Abv.

Gene ID

log2 FC

TAIR ID

Component number

Chorismate

EMB1144

EMB1144, EMBRYO DEFECTIVE 1144

0.44

AT1G48850.1

comp72334_c0

biosynthesis

EPSPS

5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNT.

0.82

AT2G45300.1

comp78915_c0

 

SK1

SHIKIMATE KINASE 1

1.08

AT2G21940.5

comp71816_c0

Tryptophan

TSB2/TRP2

TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2

−3.69

AT4G27070.1

comp79735_c0

biosynthesis

TSBTYPE2

TRYPTOPHAN SYNTHASE BETA TYPE 2

1.31

AT5G38530.1

comp76554_c0

Auxin

CYP79B2

CYTOCHROME P450, FAMILY 79

−4.59

AT4G39950.1

comp78594_c0

biosynthesis

CYP83B1

CYTOCHROME P450, FAMILY 83

−2.28

AT4G31500.1

comp82508_c1

 

TAA1

TRYPTOPHAN AMINOTRANSFERASE ARABIDOPSIS1

4.73

AT1G70560.1

comp56536_c0

 

YUC4

YUCCA 4

2.37

AT5G11320.1

comp74711_c0

 

YUC9

YUCCA 9

3.12

AT1G04180.1

comp73458_c0

Auxin response

ARF2

AUXIN RESPONSE FACTOR 2

−1.16

AT5G62000.3

comp82702_c0

factors

ARF5

AUXIN RESPONSE FACTOR 5

1.86

AT1G19850.1

comp81090_c0

 

ARF6

AUXIN RESPONSE FACTOR 6

1.05

AT1G30330.1

comp81172_c0

 

ARF16

AUXIN RESPONSE FACTOR 16

−1.34

AT4G30080.1

comp72272_c0

 

ARFP

AUXIN-RESPONSIVE FAMILY PROTEIN

−1.68

AT5G35735.1

comp76581_c1

Auxin response

IAA19

INDOLE-3-ACETIC ACID INDUCIBLE 19

2.07

AT3G15540.1

comp65987_c0

 

IAA26

INDOLE-3-ACETIC ACID INDUCIBLE 26

1.49

AT3G16500.1

comp76858_c0

 

IAA29

INDOLE-3-ACETIC ACID INDUCIBLE 29

−1.86

AT4G32280.1

comp68748_c0

 

LRP1

LATERAL ROOT PRIMORDIUM 1

3.26

AT5G12330.4

comp80582_c0

 

SAUR32

SMALL AUXIN UPREGULATED RNA 32

−1.92

AT2G46690.1

comp72184_c0

 

SAUR55

SMALL AUXIN UPREGULATED RNA 55

−1.42

AT5G50760.1

comp76265_c0

 

SAUR59

SMALL AUXIN UPREGULATED RNA 59

−1.34

AT3G60690.1

comp73582_c0

Auxin

LAX2

LIKE AUXIN RESISTANT 2

1.84

AT2G21050.1

comp74023_c1

transporters

LAX3

LIKE AUXIN RESISTANT 3

1.01

AT1G77690.1

comp78151_c1

 

PID

PINOID

2.01

AT2G34650.1

comp81377_c0

 

PIN1

PIN-FORMED 1

1.82

AT1G73590.1

comp75801_c0

 

PIN1

PIN-FORMED 1

1.38

AT1G73590.1

comp80021_c0

 

ABCB19

ATP-BINDING CASSETTE B19

2.39

AT3G28860.1

comp83655_c0

Auxin conjugate

IAR3

IAA-ALANINE RESISTANT 3

−1.95

AT1G51760.1

comp74098_c0

metabolism

ILL6

IAA-LEUCINE RESISTANT (ILR)-LIKE GENE 6

−1.30

AT1G44350.1

comp77344_c0

Strigolactone

MAX1

MORE AXILLARY BRANCHES 1/CYTOCHROME P450

0.64

AT2G26170.1

comp73668_c0

biosynthesis

MAX3

MORE AXILLARY BRANCHES 3

1.52

AT2G44990.1

comp68151_c0

Strigolactone sig.

MAX2

MORE AXILLARY BRANCHES 2

−0.28

AT2G42620.1

comp84166_c0

  1. Transcript changes after foliar glyphosate treatment (2.24 kg ha−1) compared to controls in aerial tissues derived from crown buds of leafy spurge. The Arabidopsis Information Resource was used to annotate homologs of leafy spurge transcripts (TAIR ID), to obtain gene IDs and abbreviations (Abv.); values represent log2 fold changes (FC)