Table 3 Sequencing and read mapping of the differentially expressed genes (DEGs)

Raw reads

7,164,446

7,325,695

7,563,619

7,212,252

7,316,503

Clean reads

7,113,843

7,271,861

7,515,414

7,163,347

7,266,116

Total base pairs

348,578,307

356,321,189

368,255,286

351,004,003

356,039,696

Clean Reads (%)

99.29

99.27

99.36

99.32

99.31

Mapped reads

6,621,141

6,727,919

6,879,216

6,467,083

6,467,087

Mapped reads* (%)

93.07

92.52

91.53

90.28

91.85

Perfect match

5,583,419

5,707,629

5,813,295

5,505,742

5,652,521

Perfect match* (%)

78.49

78.49

77.35

76.83

77.79

<=2 Mismatch

1,037,722

1,020,290

1,065,921

961,341

1,021,319

<=2 Mismatch* (%)

14.59

14.03

14.18

13.42

14.06

Unique match

3,117,820

3,309,503

3,456,940

3,290,477

3,293,685

Unique match* (%)

43.83

45.51

46.00

45.93

45.33

Multi-Position match

3,503,321

3,418,416

3,422,276

3,176,606

3,380,155

Multi-Position match

49.25

47.01

45.54

44.35

46.54

Unmapped reads

492,702

543,942

636,198

696,264

592,277

Unmapped reads* (%)

6.93

7.48

8.47

9.72

8.15