Table 5 Hormone-related genes that were differentially expressed during the cold treatment

ABA

Unigene19385_All

0.82

3

3.8

9-cis-epoxycarotenoid dioxygenase (NCED) [Citrus sinensis]

CL927.Contig1_All

2.9

2.9

4

short chain alcohol dehydrogenase [Ricinus communis]

CL851.Contig21_All

5.7

4.1

0.51

ABA 8′-hydroxylase [Citrus sinensis]

Unigene33085_All

9.7

12.8

14.1

ABA 8′-hydroxylase [Glycine max]

Unigene15626_All

−1.1

2

4

ABA 8′-hydroxylase [Vitis vinifera]

CL6797.Contig1_All

11.2

11.6

9.9

protein phosphatase 2C 25 isoform 1 [Vitis vinifera]

CL3200.Contig4_All

7.9

12.2

10.5

protein phosphatase 2C 59 [Vitis vinifera]

CL9817.Contig1_All

3.4

4.1

2.7

protein phosphatase 2C (PP2C) [Fagus sylvatica]

Ethylene

CL5314.Contig1_All

1.3

4.9

5

S-adenosylmethionine synthetase [Litchi chinensis]

Unigene20820_All

0.7

2.2

3

S-adenosylmethionine decarboxylase [x Citrofortunella microcarpa]

Unigene21338_All

−1

−1.7

−3.7

1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Vitis vinifera]

Unigene23036_All

0.4

1.5

2.6

probable 2-oxoglutarate/Fe(II)-dependent dioxygenase-like [Vitis vinifera]

Unigene28463_All

1.3

2.7

2.8

ethylene response 2 [Citrus sinensis]

CL9038.Contig1_All

11

10.4

9.6

ein3-binding f-box protein 4 [Populus trichocarpa]

Unigene5278_All

3.6

3.6

3.2

Ethylene-responsive transcription factor 1B, putative [Ricinus communis]

Unigene19854_All

2

3

3

Ethylene-responsive transcription factor, putative [Ricinus communis]

Unigene23980_All

1.1

1.3

2

AP2/ERF domain-containing transcription factor [Populus trichocarpa]

Unigene21687_All

2.8

3.2

3.6

ethylene responsive transcription factor 1a [Prunus salicina]

Unigene21465_All

1.1

2.1

1.9

AP2/ERF domain-containing transcription factor [Populus trichocarpa]

JA

CL5141.Contig4_All

12.1

12.7

14.1

old-yellow-enzyme homolog [Catharanthus roseus]

Unigene15722_All

0.3

1.5

2

allene oxide cyclase 2 [Glycine max]

CL2829.Contig1_All

4

4.2

3.5

4-coumarate--CoA ligase-like 9-like [Vitis vinifera]

CL9506.Contig1_All

3.6

4.8

4.4

JAZ1 [Vitis rupestris]

Unigene17827_All

1.3

3.6

3.9

transcription factor bHLH041 [Vitis vinifera]

CL6722.Contig1_All

1.5

3.4

2.5

transcription factor bHLH30-like [Glycine max]

Unigene25537_All

0.9

1.8

1.9

transcription factor bHLH13 [Vitis vinifera]

Cytokinin

Unigene25908_All

3.7

3.2

1.9

two-component response regulator ARR5-like [Vitis vinifera]

Unigene25909_All

1.5

2.3

2.2

two-component response regulator ARR5-like [Vitis vinifera]

Unigene20772_All

0.6

3.4

4.8

Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

CL8049.Contig1_All

0.6

1.5

0.8

glucan endo-1,3-beta-glucosidase-like protein 3-like isoform 2 [Vitis vinifera]

GA

CL9460.Contig1_All

1.2

2.2

2.9

gibberellin 2-beta-dioxygenase 1-like [Vitis vinifera]

Unigene21338_All

−1

−1.7

−3.7

Gibberellin 20 oxidase [Medicago truncatula]

Unigene14999_All

3.3

4.7

5.7

GRAS family transcription factor [Populus trichocarpa]

Auxin

CL7975.Contig1_All

4.2

6.1

6

cytochrome P450 83B1 [Vitis vinifera]

CL5737.Contig2_All

4.9

7

5.3

phenylalanine N-monooxygenase-like [Vitis vinifera]

Unigene22952_All

−0.4

−1

−1.9

protein AUXIN SIGNALING F-BOX 3 [Vitis vinifera]

CL9773.Contig2_All

0.9

4.9

6.2

IAA15 [Solanum lycopersicum]

Unigene20450_All

1.4

4.1

6

Auxin-responsive protein IAA1, putative [Ricinus communis]

Brassinosteroid

Unigene19738_All

−0.1

4.6

4.6

cytochrome P450, putative [Ricinus communis]

Unigene33085_All

9.7

12.8

14.1

cytochrome P450, putative [Ricinus communis]

CL1502.Contig3_All

3.9

4.1

3.4

wall-associated receptor kinase-like 1-like [Vitis vinifera]

CL7113.Contig3_All

3.9

4.6

3.8

wall-associated receptor kinase-like 9-like [Vitis vinifera]

CL8664.Contig1_All

15.2

14.7

13.5

xyloglucan endotransglycosylase [Cucumis sativus]