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Table 1 Sample comparisons and differentially expressed genes

From: RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean

Sample 1

Sample 2

Time Point

Label

Diff. Expressed Genes

Mandarin-Ottawa Low Exposure

Mandarin-Ottawa High Exposure

1

ML-MH-1

275

Mandarin-Ottawa Low Exposure

Mandarin-Ottawa High Exposure

2

ML-MH-2

135

Mandarin-Ottawa Low Exposure

Mandarin-Ottawa High Exposure

3

ML-MH-3

215

Mandarin-Ottawa Low Exposure

Mandarin-Ottawa High Exposure

4

ML-MH-4

183

Fiskeby Low Exposure

Fiskeby High Exposure

1

FL-FH-1

384

Fiskeby Low Exposure

Fiskeby High Exposure

2

FL-FH-2

88

Fiskeby Low Exposure

Fiskeby High Exposure

3

FL-FH-3

129

Fiskeby Low Exposure

Fiskeby High Exposure

4

FL-FH-4

139

Fiskeby High Exposure

Mandarin-Ottawa High Exposure

1

FH-MH-1

310

Fiskeby High Exposure

Mandarin-Ottawa High Exposure

2

FH-MH-2

332

Fiskeby High Exposure

Mandarin-Ottawa High Exposure

3

FH-MH-3

258

Fiskeby High Exposure

Mandarin-Ottawa High Exposure

4

FH-MH-4

536

  1. A description of comparisons between samples and labeling methodology. The total number of differentially expressed genes identified by cuffdiff is also shown