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Table 2 Genes showing higher differential expression in Mandarin (Ottawa) at high ozone when compared to Fiskeby at high ozone, and relevant GO term matches

From: RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean

Gmax 2.0 Primary Protein ID (1) Biological Process GO terms
Glyma.02G205800 cell wall biogenesis; “cell wall macromolecule metabolic process”; “cellulose biosynthetic process”; “hydrogen peroxide biosynthetic process”; “plant-type cell wall biogenesis”;
Glyma.03G145600 defense response to nematode; “oxidation-reduction process”; “response to oxidative stress”
Glyma.03G222000 “response to abscisic acid stimulus”; “response to cold”; “response to heat”; “response to high light intensity”; “response to hydrogen peroxide”; “response to oxidative stress”; “response to salt stress”; “response to water deprivation”
Glyma.04G063800 “defense response to bacterium”; “defense response to fungus”; “plant-type cell wall biogenesis”; “response to osmotic stress”; “secondary cell wall biogenesis”;
Glyma.04G088500 “response to salt stress”
Glyma.04G227700 “flavonol biosynthetic process”; “lignin biosynthetic process”; “phenylpropanoid metabolic process”; “positive regulation of flavonoid biosynthetic process”; “response to wounding”
Glyma.06G065000 cellulose biosynthetic process; “defense response to bacterium”; “defense response to fungus”; “glucuronoxylan metabolic process”; “plant-type cell wall biogenesis”; “positive regulation of abscisic acid biosynthetic process”; “response to osmotic stress”; “response to water deprivation”; “secondary cell wall biogenesis”; “xylan biosynthetic process”
Glyma.06G158800 “hydrogen peroxide biosynthetic process”; “proteolysis”; “transition metal ion transport”;
Glyma.07G133900 “lignin biosynthetic process”; “lignin catabolic process”; “oxidation-reduction process”; “phenylpropanoid metabolic process”; “plant-type cell wall biogenesis”;
Glyma.07G157100 “defense response”; “lignan biosynthetic process”
Glyma.09G005600 Golgi organization; “hyperosmotic response”; “lipid metabolic process”;“protein targeting to vacuole”; “proteolysis”; “response to salt stress”; “response to temperature stimulus”
Glyma.09G038500 carbohydrate metabolic process; “cell wall macromolecule catabolic process”; “glucuronoxylan metabolic process”; “hydrogen peroxide biosynthetic process”; “lignin biosynthetic process”; “protein desumoylation”; “vegetative to reproductive phase transition of meristem”; “xylan biosynthetic process”
Glyma.09G051100 cell wall biogenesis;“defense response to bacterium”; “defense response to fungus”;
Glyma.10G035500 regulation of transcription, DNA-dependent
Glyma.11G053200 glucuronoxylan metabolic process; “secondary cell wall biogenesis”;
Glyma.12G233700 “response to endoplasmic reticulum stress”; “response to heat”; “response to high light intensity”; “response to hydrogen peroxide”; “signal transduction”
Glyma.13G094900 “plant-type cell wall organization”; “response to chitin”; “response to cold”; “response to heat”; “response to mechanical stimulus”; “response to wounding”
Glyma.13G203700 plant-type cell wall modification; “regulation of transcription, DNA-dependent”; “transmitting tissue development”
Glyma.13G301900 response to wounding
Glyma.15G110200 Golgi organization; “hyperosmotic response”; “lipid metabolic process”;“protein targeting to vacuole”; “response to cadmium ion”; “response to salt stress”; “response to temperature stimulus”;
Glyma.15G143600 carbohydrate metabolic process; “cell wall macromolecule catabolic process”; “glucuronoxylan metabolic process”; “hydrogen peroxide biosynthetic process”; “lignin biosynthetic process”; “protein desumoylation”; “vegetative to reproductive phase transition of meristem”; “xylan biosynthetic process”
Glyma.15G182600 “regulation of hydrogen peroxide metabolic process”; “response to hypoxia”;“systemic acquired resistance, salicylic acid mediated signaling pathway”
Glyma.17G072200 cell wall biogenesis;“hydrogen peroxide biosynthetic process”;
Glyma.19G008200 pollen tube growth; “regulation of defense response”
  1. Glyma Identifiers for a subset of genes showing higher expression in Mandarin (Ottawa) in the Fiskeby/Mandarin (Ottawa) high ozone comparison. These genes were selected from the total of 58 genes for the GO terms related to oxidative or general stress response
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