Table 1 Assembly statistics of contigs and scaffolds generated using the three sequencing platforms Illumina HiSeq2000, 454 GS FLX and SOLiD 5500XL
Description | Contigs | Scaffolds | GapClosed scaffolds | Super-scaffolds |
|---|---|---|---|---|
Contigs generated | 107785 | 22776 | 22776 | 9059 |
Maximum Contig Length | 115044 | 414711 | 411690 | 2211552 |
Minimum Contig Length | 147 | 200 | 200 | 200 |
Average Contig Length | 3454 | 16984 | 16629 | 44354 |
Total Contigs Length | 372395755 | 386828951 | 378759759 | 401803260 |
Total Number of non-ATGC characters | 0 | 17898452 | 2665702 | 26110056 |
Percentage of non-ATGC characters | 0 | 4.627 | 0.704 | 6.498 |
Contigs > = 1 Kb | 43174 | 14791 | 14769 | 4159 |
Contigs > = 10 Kb | 11594 | 7544 | 7407 | 2357 |
N50 value | 12769 | 61854 | 61242 | 303233 |
N90 value | 2071 | 12742 | 12534 | 73672 |