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Table 2 Branch Score Distance (BSD) between trees generated from simulated reads and the optimal AAF tree

From: An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data

Tree No tip correction With tip correction
AAF 2X (Fig. 1c) 0.062 0.022
AAF 2X filtered 0.063 0.043
AAF 5X (Fig. 1d) 0.104 0.028
AAF 5X filtered (Fig. 1e) 0.016 0.011
  1. The optimal AAF tree that is generated from assembled data using k = 21 for the 11 primate dataset (Fig. 1B) is compared to trees generated from simulated SRS data with different coverage, with or without filtering, and before and after tip correction