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Table 1 Genome statistics of nuclear genome and mating-type chromosome regions

From: Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

 

Nuclear genome

NRRa regions

PARb regions

Assembly size (Mb)

26.1

1.86

0.38

Scaffolds (count)

1,231

85

2

Scaffold N50 (kb)

185

48

381

Contigs (count)

2,104

229

16

Contig N50 (kb)

50

13

45

GC content (%)

55.4

54.6

53.9

TE content (%)

14

41

13

Protein coding genes

7,364

350

99

Mean coding length

1,614

1,344

1,408

Median coding length

1,338

954

1,302

Mean exons/gene (count)

5.6

4.6

5.1

Mean intercds length (bp)c

1,181

2,600

1,861

tRNAs

134

5

2

  1. aNon-recombining regions (NRR). bPseudo-autosomal regions (PAR). caverage length between coding sequence (cds) start and stop