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Table 2 Number of DE genes (p and q < 0.05) as determined by two different statistical programs (Cuffdiff and NBPSeq)

From: RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection

  Cuffdiff NBPSeq Number of DE genes identified by both methods Number of DE genes with |log2(FC)| > 2
PR_PVYO_4h 506 321 268 14
PR_ PVYO _10h 455 154 139 7
RB_ PVYO _4h 1326 542 489 60
RB_ PVYO _10h 819 182 156 30
PR_PVYNTN_4h 518 287 245 31
PR_ PVYNTN _10h 791 593 488 27