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Table 3 Disease resistance annotated-genes which were DE (p < 0.05) between the two hosts before PVY inoculation

From: RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection

Gene ID Pseudo counts PR Pseudo counts RB Ratio Pseudo counts PR over RB Change of expression after PVY inoculation in PR Change of expression after PVY inoculation in RB Chr.
PGSC0003DMG400006296 68 0 Inf. n.s. n.s. 1
PGSC0003DMG400006297 24 10 2.4 n.s. n.s. 1
PGSC0003DMG400013094 42 21 2.0 n.s. n.s. 2
PGSC0003DMG400024337 8 0 Inf. n.s. n.s. 3
PGSC0003DMG400029452 116 42 2.8 n.s. n.s. 4
PGSC0003DMG400029456 48 21 2.3 n.s. n.s. 4
PGSC0003DMG400029457 68 25 2.7 n.s. n.s. 4
PGSC0003DMG400029505 1018 281 3.6 n.s. n.s. 4
PGSC0003DMG400029506 55 17 3.2 n.s. n.s. 4
PGSC0003DMG400029460 43 13 3.3 n.s. n.s. 4
PGSC0003DMG400013486 194 54 3.6 n.s. n.s. 5
PGSC0003DMG400013490 1681 489 3.4 n.s. n.s. 5
PGSC0003DMG400025615 16 0 Inf. n.s. n.s. 5
PGSC0003DMG400038713 15 0 Inf. n.s. n.s. 5
PGSC0003DMG400033131 238 127 1.9 n.s. n.s. 6
PGSC0003DMG400024206 401 128 3.1 n.s. n.s. 7
PGSC0003DMG400011907 16 0 Inf. n.s. n.s. 9
PGSC0003DMG400011906 20 0 Inf. n.s. n.s. 9
PGSC0003DMG400009272 9 5 1.8 n.s. n.s. 11
PGSC0003DMG400027797 631 111 5.7 n.s. n.s. 11
PGSC0003DMG401004578 65 17 3.8 n.s. n.s. 12
PGSC0003DMG400029415 348 173 2.0 −0.79 (4 hpi O) n.s. 12
−1.06 (4 hpi NTN)
PGSC0003DMG400007870 105 12 8.8 n.s. n.s. 12
PGSC0003DMG400007872 162 24 6.8 n.s. n.s. 12
PGSC0003DMG400034825 16 0 Inf. n.s. n.s. 12
PGSC0003DMG400030045 5 11 0.5 n.s. n.s. 4
PGSC0003DMG400002217 141 383 0.4 n.s. n.s. 4
PGSC0003DMG401011522 20 70 0.3 n.s. n.s. 4
PGSC0003DMG400011527 35 89 0.4 n.s. n.s. 4
PGSC0003DMG401015877 126 397 0.3 n.s. n.s. 4
PGSC0003DMG400002961 32 81 0.4 n.s. n.s. 4
PGSC0003DMG400003380 155 679 0.2 n.s. n.s. 5
PGSC0003DMG400025547 14 32 0.4 n.s. n.s. 5
PGSC0003DMG400005173 0 22 Inf. n.s. n.s. 6
PGSC0003DMG400033154 8 19 0.4 n.s. n.s. 6
PGSC0003DMG400024203 0 14 Inf. n.s. n.s. 7
PGSC0003DMG400029586 0 51 Inf. n.s. +1.25 (4 hpi) 8
PGSC0003DMG400029590 32 119 0.3 n.s. n.s. 8
PGSC0003DMG400042937 0 13 Inf. n.s. n.s. 8
PGSC0003DMG400002278 0 9 Inf. n.s. n.s. 8
PGSC0003DMG400002279 14 34 0.4 n.s. n.s. 8
PGSC0003DMG400016599 13 136 0.1 n.s. n.s. 9
PGSC0003DMG400016628 6 29 0.2 n.s. n.s. 9
PGSC0003DMG401008349 40 137 0.3 n.s. n.s. 10
PGSC0003DMG400011426 41 247 0.2 n.s. n.s. 10
PGSC0003DMG403008349 85 264 0.3 n.s. n.s. 10
PGSC0003DMG400019669 125 323 0.4 n.s. n.s. 11
PGSC0003DMG400027410 0 78 Inf. n.s. n.s. 11
PGSC0003DMG400030239 8 25 0.3 n.s. n.s. 11
PGSC0003DMG400030240 0 7 Inf. n.s. n.s. 11
PGSC0003DMG400004295 70 171 0.4 n.s. n.s. 12
PGSC0003DMG400024273 17 104 0.2 n.s. n.s. 12
PGSC0003DMG401029345 265 589 0.4 n.s. n.s. 12
PGSC0003DMG400045101 0 17 Inf. n.s. n.s. 12
PGSC0003DMG400047046 26 85 0.3 n.s. n.s. 12
  1. Pseudo counts were determined with NBP-Seq. Genes which were identified as pseudogenes by Lozano et al. [11] are italicized