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Table 4 Disease resistance annotated-genes which were DE (p < 0.05) after PVY inoculation

From: RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection

Gene ID PR_PVYO PR_PVYNTN RB_PVYO Chr.
4 hpi 10 hpi 4 hpi 10 hpi 4 hpi 10 hpi
PGSC0003DMG400029314 −1.10 n.s. −1.42 n.s. n.s. n.s. 12
PGSC0003DMG400029415 −0.79 n.s. −1.06 n.s. n.s. n.s. 12
PGSC0003DMG400024661 −1.00 n.s. −1.08 n.s. n.s. n.s. 3
PGSC0003DMG400005542 −0.75 n.s. n.s. n.s. n.s. n.s. 12
PGSC0003DMG400008296 n.s. n.s. n.s. +1.84 n.s. n.s. 2
PGSC0003DMG400029586 n.s. n.s. n.s. n.s. +1.25 n.s. 8
PGSC0003DMG400044242 n.s. n.s. n.s. n.s. n.s. +1.68 7
  1. Data are |log2(FC)|. Genes which were identified as pseudogenes by Lozano et al. [11] are italicized