De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways

Bas Verbruggen; Lisa K. Bickley; Eduarda M. Santos; Charles R. Tyler; Grant D. Stentiford; Kelly S. Bateman; Ronny van Aerle

doi:10.1186/s12864-015-1667-1

Table 7 Carcinus maenas pathogen associated molecular pattern recognition genes

From: De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways

PRP group	Transcript	Identity (%)	Length	E-value	Query	Ancestor
GNBP	comp44152_c0_seq1	42.06	340	1.00e-65	gi\|300507044 : gram-negative binding protein [Artemia sinica]	Crustacea
	comp44453_c0_seq (1–2)	58.06	341	3.00e-123	gi\|62122584 : GNBP [Oryzias latipes]	Bilateria
	comp74133_c0_seq1	44.8	346	8.00e-88	gi\|62122584 : GNBP [Oryzias latipes]	Bilateria
	comp83740_c0_seq (1–5)	46.02	339	5.00e-87	gi\|62122584 : GNBP [Oryzias latipes]	Bilateria
	comp19734_c0_seq1	41.55	142	8.00e-32	gi\|62122584 : GNBP [Oryzias latipes]	Bilateria
	comp136078_c0_seq1	62.96	81	3.00e-26	gi\|62122584 : GNBP [Oryzias latipes]	Bilateria
	comp75261_c0_seq1	27.57	243	6.00e-22	gi\|62122584 : GNBP [Oryzias latipes]	Bilateria
TECP	comp85313_c2_seq1	39.94	318	6.00e-63	gi\|385049105 : thioester containing protein 3, partial [Daphnia parvula]	Crustacea
	comp65627_c0_seq1	46.34	246	3.00e-58	gi\|54644242 : Thioester-containing protein 6 [Drosophila pseudoobscura pseudoobscura]	Pancrustacea
	comp87629_c0_seq4	74.36	234	6.00e-101	gi\|331031264 : TEP isoform 2 [Pacifastacus leniusculus]	Pleocyemata
	comp74624_c1_seq1	40.65	310	8.00e-56	gi\|385049099 : thioester containing protein 3, partial [Daphnia pulex]	Crustacea
	comp65627_c1_seq1	36.78	590	6.00e-118	gi\|54644242 : Thioester-containing protein 6 [Drosophila pseudoobscura pseudoobscura]	Pancrustacea
	comp74624_c2_seq1	37.83	534	1.00e-105	gi\|54644242 : Thioester-containing protein 6 [Drosophila pseudoobscura pseudoobscura]	Pancrustacea
	comp85313_c0_seq1	38.14	430	1.00e-80	gi\|568250870 : thioester-containing protein [Anopheles darlingi]	Pancrustacea
	comp103781_c0_seq1	43.36	113	4.00e-22	gi\|54644242 : Thioester-containing protein 6 [Drosophila pseudoobscura pseudoobscura]	Pancrustacea
C-Type Lectin	comp69837_c0_seq1	43.15	146	1.00e-25	gi\|558633447 : C-type lectin [Marsupenaeus japonicus]	Decapoda
	comp86095_c0_seq (1–2)	43.92	148	2.00e-25	gi\|558633447 : C-type lectin [Marsupenaeus japonicus]	Decapoda
	comp68699_c0_seq1	38.89	144	1.00e-24	gi\|558633447 : C-type lectin [Marsupenaeus japonicus]	Decapoda
	comp87731_c3_seq (2–3)	33.78	225	8.00e-25	gi\|657397985 : C-type lectin receptor-like tyrosine-kinase plant [Medicago truncatula]	Eukaryota
	comp88573_c0_seq (1–2)	57.5	80	4.00e-22	gi\|676264911 : C-type lectin domain family 3 member A [Fukomys damarensis]	Bilateria
	comp90611_c0_seq1	64.56	158	5.00e-60	gi\|575878533 : C-type lectin [Scylla paramamosain]	Portunoidea

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