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Table 9 Carcinus maenas RNAi pathway components

From: De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways

RNAi Transcript Identity (%) Length E-value Query Ancestor
TRBP comp79785_c0_seq (1–2) 83.97 343 2.00e-167 gi|332271591 : TAR RNA-binding protein isoform 1 [Marsupenaeus japonicus] Decapoda
  comp79200_c0_seq (1–2) 36.74 460 4.00e-77 gi|110825988 : probable methyltransferase TARBP1 [Homo sapiens] Bilateria
  comp49673_c0_seq1 46.34 205 2.00e-41 gi|444174849 : TAR RNA-binding protein 1 [Penaeus monodon] Decapoda
R2D2 comp79785_c0_seq (1–2) 48.86 350 8.00e-81 gi|619831236 : R2D2 [Bemisia tabaci] Pancrustacea
  comp49673_c0_seq1 38.32 167 6.00e-24 gi|619831236 : R2D2 [Bemisia tabaci] Pancrustacea
drosha comp87202_c0_seq1 93.37 829 0 gi|396941645 : drosha [Marsupenaeus japonicus] Decapoda
Dicer2 comp90354_c0_seq (1–11) 47.73 1253 0 gi|402534262 : Dicer-2 [Marsupenaeus japonicus] Decapoda
Dicer1 comp85246_c1_seq1 77.95 1578 0 gi|195424855 : dicer-1 [Litopenaeus vannamei] Decapoda
  comp90354_c0_seq (5–6) 31 658 1.00e-83 gi|195424855 : dicer-1 [Litopenaeus vannamei] Decapoda
  comp55144_c0_seq1 61.06 113 3.00e-37 gi|283827860 : dicer-1 [Marsupenaeus japonicus] Decapoda
  comp77864_c(1–2)_seq (1–2) 83.67 98 2.00e-40 gi|195424855 : dicer-1 [Litopenaeus vannamei] Decapoda
ago2 comp81967_c(1–2)_seq1 37.16 802 5.00e-139 gi|563729913 : argonaute2 [Penaeus monodon] Decapoda
  comp41784_c0_seq1 52.74 876 0 gi|563729913 : argonaute2 [Penaeus monodon] Decapoda
  comp76466_c0_seq1 42.51 821 0 gi|563729913 : argonaute2 [Penaeus monodon] Decapoda
ago1 comp81967_c1_seq1 89.45 758 0 gi|321468117 : putative Argonaute protein [Daphnia pulex] Crustacea
  comp41784_c0_seq1 43.65 811 0 gi|321468117 : putative Argonaute protein [Daphnia pulex] Crustacea
  comp76466_c0_seq1 41.58 671 4.00e-148 gi|321468117 : putative Argonaute protein [Daphnia pulex] Crustacea
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