De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways

Verbruggen, Bas; Bickley, Lisa K.; Santos, Eduarda M.; Tyler, Charles R.; Stentiford, Grant D.; Bateman, Kelly S.; van Aerle, Ronny

doi:10.1186/s12864-015-1667-1

Table 9 Carcinus maenas RNAi pathway components

From: De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways

RNAi	Transcript	Identity (%)	Length	E-value	Query	Ancestor
TRBP	comp79785_c0_seq (1–2)	83.97	343	2.00e-167	gi\|332271591 : TAR RNA-binding protein isoform 1 [Marsupenaeus japonicus]	Decapoda
	comp79200_c0_seq (1–2)	36.74	460	4.00e-77	gi\|110825988 : probable methyltransferase TARBP1 [Homo sapiens]	Bilateria
	comp49673_c0_seq1	46.34	205	2.00e-41	gi\|444174849 : TAR RNA-binding protein 1 [Penaeus monodon]	Decapoda
R2D2	comp79785_c0_seq (1–2)	48.86	350	8.00e-81	gi\|619831236 : R2D2 [Bemisia tabaci]	Pancrustacea
	comp49673_c0_seq1	38.32	167	6.00e-24	gi\|619831236 : R2D2 [Bemisia tabaci]	Pancrustacea
drosha	comp87202_c0_seq1	93.37	829	0	gi\|396941645 : drosha [Marsupenaeus japonicus]	Decapoda
Dicer2	comp90354_c0_seq (1–11)	47.73	1253	0	gi\|402534262 : Dicer-2 [Marsupenaeus japonicus]	Decapoda
Dicer1	comp85246_c1_seq1	77.95	1578	0	gi\|195424855 : dicer-1 [Litopenaeus vannamei]	Decapoda
	comp90354_c0_seq (5–6)	31	658	1.00e-83	gi\|195424855 : dicer-1 [Litopenaeus vannamei]	Decapoda
	comp55144_c0_seq1	61.06	113	3.00e-37	gi\|283827860 : dicer-1 [Marsupenaeus japonicus]	Decapoda
	comp77864_c(1–2)_seq (1–2)	83.67	98	2.00e-40	gi\|195424855 : dicer-1 [Litopenaeus vannamei]	Decapoda
ago2	comp81967_c(1–2)_seq1	37.16	802	5.00e-139	gi\|563729913 : argonaute2 [Penaeus monodon]	Decapoda
	comp41784_c0_seq1	52.74	876	0	gi\|563729913 : argonaute2 [Penaeus monodon]	Decapoda
	comp76466_c0_seq1	42.51	821	0	gi\|563729913 : argonaute2 [Penaeus monodon]	Decapoda
ago1	comp81967_c1_seq1	89.45	758	0	gi\|321468117 : putative Argonaute protein [Daphnia pulex]	Crustacea
	comp41784_c0_seq1	43.65	811	0	gi\|321468117 : putative Argonaute protein [Daphnia pulex]	Crustacea
	comp76466_c0_seq1	41.58	671	4.00e-148	gi\|321468117 : putative Argonaute protein [Daphnia pulex]	Crustacea

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