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Fig. 5 | BMC Genomics

Fig. 5

From: NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites

Fig. 5

Peak call distributions and word logos at peak modes showing the effect of G’-filtering. Panel a: Distribution of peak calls for nanoCAGE before (left) and after G’-filtering (right), and for unfiltered PEAT peak calls (bottom). Presented are results for library S1BALA (experiment 1). Promoter = ≤3000 bp from TAIR10 transcription start site (TSS), TSS = overlapping TAIR10 TSS, 5’ UTR = 5′ untranslated region, CDS = Exons minus untranslated regions, Intron = intronic regions, 3′ UTR = 3′ untranslated region, Intergenic = peaks > 3000 bp from a TSS or > 1000 bp from 3′ portion of gene. Panel b: WebLogo 3 [18] was used to produce word logos at the peak modes for all peaks (top) or only those peaks that passed filtering (bottom). An arrow indicates the position of the read peak mode

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