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Table 3 Resistance QTL clusters and hotspots identified for Verticillium wilt (VW), Fusarium wilt (FW), rootknot nematodes (RKN) and reniform nematodes (RN)

From: Genetic analysis of Verticillium wilt resistance in a backcross inbred line population and a meta-analysis of quantitative trait loci for disease resistance in cotton

Chr Total No. clusters No. QTLs Type hotspot Region Linked markers
c1 5 0     
c2 5 0     
c3 9 0     
c4 10 1 5 VW, 2 RKN VW 0–10 cM CIR 210A, NAU2235a, BNL2572CIR122B, NAU2291B
c5 21 2 7 RKN, 3 VW, 1 BRR RKN 10–35 cM CIR067, CIR224a, CIR102, CIR280b, CIR062a
c5    5 VW VW 75–100 cM CIR373, BNL3995, JESPR065b
c6 8 1 5 FW, 1 VW FW 5–25 Cm CIR267a, BNL3359b, CIR298, CIR203, BNL2569
c7 25 3 10 RKN, 2 VW, 1 FW RKN 0–25 Cm pAR057b, pAR188b, CG05a
c7    4 RKN RKN 40–55 cM CG23a, CIR355, NAU2432b
c7    5 VW VW 65–85 cM NAU2186a, R2, BNL1597, CIR412
c8 14 2 2 FW, 2 VW   0–20 cM CIR244, G1114, JESPR232a, pAR792a
C8    7 VW VW 35–60 Cm CIR376a, JESPR066, CIR237, CIR254a, BNL2961a
c9 17 1 3 VW, 2 RKN   35–55 cM MUSB1040b, BNL3799, JESPR230b
c10 0 0     
c11 23 2 17 RKN, 1 VW, 1 FW RKN 0–25 cM CIR069b, pAR044b, pAR648b
c11    4 RKN, 2 FW, 1 RNa RKN 20–45 cM pAR044b, pAR648b, CIR196, CIR003, BNL1066, BNL0836
c12 3 0     
c13 6 0     
c14 14 1 9 RKN, 1FW RKN 0–20 cM CIR246, pAR723b, G1012
c15 8 1 4 RKN, 1 VW RKN 40–60 cM pAR015b, BNL2646, JESPR205
c16 21 3 8 VW VW 0–25 cM A1826, pAR544
c16    6 VW, 1 FW VW 30–55 cM HAU0966a, BNL1604a, BNL1122b
c16    6 VW VW 57–75 cM JESPR228a, HAU2432a, BNL2986
c17 7 1 4 FW, 2 VW FW 0–10 cM BNL3408a, CIR347, BNL2443a
c18 2 0     
c19 21 2 5 VW, 5 FW VW, FW 0–25 cM CIR415a, CIR224b, CIR242, CIR165a
c19    4 RKN, 2 VW RKN 20–50 cM CIR165a, BNL3452, CIR086a, CIR176
c20 7 1 3 VW, 2 RKN   0–20 cM A1214a, CMS21b, CIR187
c21 22 2 5 VW, 2 RKN, 2 FW VW 0–25 cM LTCOL, CG22, CIR112, CIR069a, CIR316, JESPR066a
c21    4 VW   85–105 cM BNL3997, CIR061c, HAU4855, BNL1053a, BNL1681b
c22 9 1 2 VW, 2 FW, 1 RKN   0–25 cM NAU2235b, BNL3873, CIR218b, CIR122a, NAU2291a
c23 36 2 22 VW, 1 FW, 2 RKN VW 0–25 cM CIR198, CIR286, BNL086b, CIR019, BNL1161a, BNL3383
c23    4 VW VW 35–45 cM pAR517, CAC263d
c24 4 1 3 VW, 1 FW   0–25 cM CIR026, CIR388, JESPR157a, HAU2407b, BNL3860
c25 2 0     
c26 7 1 4 VW VW 0–20 cM JESPR300b, NAU3896, CIR272b, BNL1045a
  1. BRR black root rot
  2. aa major resistance gene Ren lon transferred to Upland from G. longicalyx