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Table 3 Resistance QTL clusters and hotspots identified for Verticillium wilt (VW), Fusarium wilt (FW), rootknot nematodes (RKN) and reniform nematodes (RN)

From: Genetic analysis of Verticillium wilt resistance in a backcross inbred line population and a meta-analysis of quantitative trait loci for disease resistance in cotton

Chr

Total

No. clusters

No. QTLs

Type hotspot

Region

Linked markers

c1

5

0

    

c2

5

0

    

c3

9

0

    

c4

10

1

5 VW, 2 RKN

VW

0–10 cM

CIR 210A, NAU2235a, BNL2572CIR122B, NAU2291B

c5

21

2

7 RKN, 3 VW, 1 BRR

RKN

10–35 cM

CIR067, CIR224a, CIR102, CIR280b, CIR062a

c5

  

5 VW

VW

75–100 cM

CIR373, BNL3995, JESPR065b

c6

8

1

5 FW, 1 VW

FW

5–25 Cm

CIR267a, BNL3359b, CIR298, CIR203, BNL2569

c7

25

3

10 RKN, 2 VW, 1 FW

RKN

0–25 Cm

pAR057b, pAR188b, CG05a

c7

  

4 RKN

RKN

40–55 cM

CG23a, CIR355, NAU2432b

c7

  

5 VW

VW

65–85 cM

NAU2186a, R2, BNL1597, CIR412

c8

14

2

2 FW, 2 VW

 

0–20 cM

CIR244, G1114, JESPR232a, pAR792a

C8

  

7 VW

VW

35–60 Cm

CIR376a, JESPR066, CIR237, CIR254a, BNL2961a

c9

17

1

3 VW, 2 RKN

 

35–55 cM

MUSB1040b, BNL3799, JESPR230b

c10

0

0

    

c11

23

2

17 RKN, 1 VW, 1 FW

RKN

0–25 cM

CIR069b, pAR044b, pAR648b

c11

  

4 RKN, 2 FW, 1 RNa

RKN

20–45 cM

pAR044b, pAR648b, CIR196, CIR003, BNL1066, BNL0836

c12

3

0

    

c13

6

0

    

c14

14

1

9 RKN, 1FW

RKN

0–20 cM

CIR246, pAR723b, G1012

c15

8

1

4 RKN, 1 VW

RKN

40–60 cM

pAR015b, BNL2646, JESPR205

c16

21

3

8 VW

VW

0–25 cM

A1826, pAR544

c16

  

6 VW, 1 FW

VW

30–55 cM

HAU0966a, BNL1604a, BNL1122b

c16

  

6 VW

VW

57–75 cM

JESPR228a, HAU2432a, BNL2986

c17

7

1

4 FW, 2 VW

FW

0–10 cM

BNL3408a, CIR347, BNL2443a

c18

2

0

    

c19

21

2

5 VW, 5 FW

VW, FW

0–25 cM

CIR415a, CIR224b, CIR242, CIR165a

c19

  

4 RKN, 2 VW

RKN

20–50 cM

CIR165a, BNL3452, CIR086a, CIR176

c20

7

1

3 VW, 2 RKN

 

0–20 cM

A1214a, CMS21b, CIR187

c21

22

2

5 VW, 2 RKN, 2 FW

VW

0–25 cM

LTCOL, CG22, CIR112, CIR069a, CIR316, JESPR066a

c21

  

4 VW

 

85–105 cM

BNL3997, CIR061c, HAU4855, BNL1053a, BNL1681b

c22

9

1

2 VW, 2 FW, 1 RKN

 

0–25 cM

NAU2235b, BNL3873, CIR218b, CIR122a, NAU2291a

c23

36

2

22 VW, 1 FW, 2 RKN

VW

0–25 cM

CIR198, CIR286, BNL086b, CIR019, BNL1161a, BNL3383

c23

  

4 VW

VW

35–45 cM

pAR517, CAC263d

c24

4

1

3 VW, 1 FW

 

0–25 cM

CIR026, CIR388, JESPR157a, HAU2407b, BNL3860

c25

2

0

    

c26

7

1

4 VW

VW

0–20 cM

JESPR300b, NAU3896, CIR272b, BNL1045a

  1. BRR black root rot
  2. aa major resistance gene Ren lon transferred to Upland from G. longicalyx
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BMC Genomics

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