Table 1 Summary of sequence data generated for the Macrobrachium nipponense transcriptome, and quality filtering
Group | Tissue | Reads | Clean reads | Total Clean Nucleotides (nt) | Q20 percentage |
|---|---|---|---|---|---|
Normoxia | Hepatopancreas | 46,472,741 | 32,323,574 | 4,865,587,148 | 98.56 % |
Muscle | 52,773,612 | 50,213,656 | 4,822,295,055 | 98.42 % | |
Gill | 58,195,908 | 52,684,676 | 4,741,620,840 | 98.26 % | |
Hypoxia | Hepatopancreas | 45,590,728 | 31,457,005 | 4,731,627,788 | 98.35 % |
Muscle | 49,727,598 | 47,295,194 | 4,712,350,852 | 98.15 % | |
Gill | 55,587,478 | 51,320,754 | 4,618,867,860 | 97.78 % |