Table 2 Samples used in resequencing studies with numbers of SNPs identified using stringent cutoff (99 %)
From: Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds
Code | Breeds | N | Body mass | Ear | Depth (x) | Fixed ref allele | Polymorphic | Fixed non-ref allele | Uninformative |
|---|---|---|---|---|---|---|---|---|---|
SC pools | |||||||||
BT | Border Terrier | 5 | small | non-drop | 4,748 | 2,359 | 1,092 | 1,630 | 100 |
JR | Jack Russell Terrier | 5 | small | non-drop | 4,910 | 966 | 3,562 | 596 | 57 |
GS | German Shepherd | 5 | large | non-drop | 5,182 | 1,442 | 2,489 | 1,165 | 85 |
WEI | Weimeraner | 5 | large | drop | 4,305 | 1,648 | 2,923 | 513 | 97 |
ESS | English Springer Spaniel | 5 | large | drop | 1,990 | 2,160 | 2,296 | 531 | 194 |
WGS pools | |||||||||
Pool 1 | Wolf | 12 | large | non-drop | 7.5 | 2,450 | 1,397 | 449 | 885 |
Pool 2 | Smaland Hound, Norwegian Elkhound, Swedish Elkhound, Finnish Lapphund | 12a | large | mix | 6.9 | 2,135 | 1,688 | 405 | 953 |
Pool 3 | Cocker spaniel, Springer Spaniel, Golden Retriever, Labrador Retriever | 12a | large | drop | 6.1 | 2,426 | 1,391 | 300 | 1,064 |
Pool 4 | Drever | 12 | large | drop | 8.0 | 2,891 | 862 | 606 | 822 |
Pool 5 | Belgian Tervuren | 12 | large | non-drop | 8.1 | 2,281 | 1,508 | 531 | 861 |
Pool 6 | Bearded Collie, Hovawart, Riesenschnauzer, German Shepherd | 12a | large | mix | 7.9 | 2,046 | 2,172 | 187 | 776 |