|
Stress exposuresa
|
---|
|
None
|
MSB
|
l-H2O2
|
h-H2O2
|
tBOOH
|
Diamide
|
NaCl
|
---|
|
Number of genes influenced by stress exposure and/or atfA deletion
|
---|
Increased transcription
| | | | | | | |
Only in controlb
|
-
|
1053
|
117
|
444
|
391
|
497
|
709
|
Only in ΔatfA
c
|
-
|
480
|
318
|
508
|
927
|
387
|
386
|
In both strainsd
|
-
|
521
|
36
|
355
|
975
|
1380
|
388
|
Control vs. ΔatfA
e
|
657
|
1646
|
649
|
585
|
709
|
526
|
725
|
AtfA-dependentf
|
657
|
721
|
64
|
130
|
148
|
60
|
313
|
Ratio of AtfA-dependent genesg
| |
0.46
|
0.42
|
0.16
|
0.11
|
0.03
|
0.29
|
Decreased transcription
| | | | | | | |
Only in controlh
|
-
|
1228
|
189
|
467
|
395
|
696
|
653
|
Only in ΔatfA
i
|
-
|
582
|
201
|
513
|
738
|
519
|
466
|
In both strainsj
|
-
|
468
|
128
|
322
|
1046
|
1326
|
379
|
Control vs. ΔatfA
k
|
542
|
1815
|
648
|
661
|
749
|
310
|
431
|
AtfA-dependentl
|
542
|
857
|
34
|
74
|
91
|
64
|
119
|
Ratio of AtfA-dependent genes
| |
0.51
|
0.11
|
0.09
|
0.06
|
0.03
|
0.12
|
-
aStressor concentrations are presented in footnotes to Table 2
-
bUp-regulation was defined by the threshold of log2 (Itreated, control/Iuntreated, control) > 1 and log2 (Itreated, ΔatfA
/Iuntreated, ΔatfA
) ≤ 1
-
cUp-regulation was defined by the threshold of log2 (Itreated, ΔatfA
/Iuntreated, ΔatfA
) > 1 and log2 (Itreated, control/Iuntreated, control) ≤ 1
-
dUp-regulation was defined by the threshold of log2 (Itreated, control/Iuntreated, control) > 1 and log2 (Itreated, ΔatfA
/Iuntreated, ΔatfA
) > 1
-
eUp-regulation was defined by the threshold of log2 (Itreated, control /Itreated, ΔatfA
) > 1
-
fUp-regulation was defined by the threshold of log2 (Itreated, control /Itreated, ΔatfA
) > 1, log2 (Itreated, control/Iuntreated, control) > 1 and log2 (Itreated, ΔatfA
/Iuntreated, ΔatfA
) ≤ 1
-
gNumber of AtfA dependent genes/number of genes regulated in the control strain
-
hDown-regulation was defined by the threshold of log2 (Itreated, control/Iuntreated, control) < −1 and log2 (Itreated, ΔatfA
/Iuntreated, ΔatfA
) ≥ −1
-
iDown-regulation was defined by the threshold of log2 (Itreated, ΔatfA
/Iuntreated, ΔatfA
) < −1 and log2 (Itreated, control/Iuntreated, control) ≥ −1
-
jDown-regulation was defined by the threshold of log2 (Itreated, control/Iuntreated, control) < −1 and log2 (Itreated, ΔatfA
/Iuntreated, ΔatfA
) < −1
-
kDown-regulation was defined by the threshold of log2 (Itreated, control /Itreated, ΔatfA
) < −1
-
lDown-regulation was defined by the threshold of log2 (Itreated, control /Itreated, ΔatfA
) < −1, log2 (Itreated, control/Iuntreated, control) < −1 and log2 (Itreated, ΔatfA
/Iuntreated, ΔatfA
) ≥ −1