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Table 7 Significantly depleted human TFs for the downregulated genes in the EMT process. The depleted transcription factors (TFs) were inferred by comparing ChIP-Seq or ChIP-chip identified target genes (TGs) of each TF with the downregulated genes in the EMT process. The depleted TFs were sorted according to the depleted fold ratios

From: Analysis of the TGFβ-induced program in primary airway epithelial cells shows essential role of NF-κB/RelA signaling network in type II epithelial mesenchymal transition

Human TFs

PMID

# total TGs

# DETGs

Fold ratio

corrected P-value

Cell Lines

GABP

17652178

655

16

3.5

2.8E-09

JURKAT

KDM6A

18722178

410

14

2.5

2.2E-03

U937_AND_SAOS2

ETS1

20019798

1446

59

2.1

3.3E-10

JURKAT

EST1

17652178

636

28

2

3.3E-03

JURKAT

GABP

19822575

2430

132

1.6

4.4E-08

HepG2

  1. PMID pubmed article number; # total TGs number of ChIP-Seq or ChIP-chip identified target genes (TGs) of each TF; #DETGs number of differentially expressed genes