TY - JOUR AU - Kang, H. J. AU - Kawasawa, Y. I. AU - Cheng, F. AU - Zhu, Y. AU - Xu, X. AU - Li, M. PY - 2011 DA - 2011// TI - Spatio-temporal transcriptome of the human brain JO - Nature VL - 478 ID - Kang2011 ER - TY - JOUR AU - Willott, J. F. AU - Shnerson, A. PY - 1978 DA - 1978// TI - Rapid development of tuning characteristics of inferior colliculus neurons of mouse pups JO - Brain Res VL - 148 ID - Willott1978 ER - TY - JOUR AU - Ehret, G. PY - 1976 DA - 1976// TI - Development of absolute auditory thresholds in the house mouse (Mus musculus) JO - J Am Audiol Soc VL - 1 ID - Ehret1976 ER - TY - JOUR AU - Ehret, G. PY - 1977 DA - 1977// TI - Postnatal development in the acoustic system of the house mouse in the light of developing masked thresholds JO - J Acoust Soc Am VL - 62 ID - Ehret1977 ER - TY - JOUR AU - Ehret, G. AU - Romand, R. PY - 1992 DA - 1992// TI - Development of tone response thresholds, latencies and tuning in the mouse inferior colliculus JO - Brain Res Dev Brain Res VL - 67 ID - Ehret1992 ER - TY - JOUR AU - Froemke, R. C. AU - Jones, B. J. PY - 2011 DA - 2011// TI - Development of auditory cortical synaptic receptive fields JO - Neurosci Biobehav Rev VL - 35 ID - Froemke2011 ER - TY - JOUR AU - Sanes, D. H. AU - Bao, S. PY - 2009 DA - 2009// TI - Tuning up the developing auditory CNS JO - Curr Opin Neurobiol VL - 19 ID - Sanes2009 ER - TY - JOUR AU - Sanes, D. H. AU - Woolley, S. M. PY - 2011 DA - 2011// TI - A behavioral framework to guide research on central auditory development and plasticity JO - Neuron VL - 72 ID - Sanes2011 ER - TY - JOUR AU - Bao, S. PY - 2015 DA - 2015// TI - Perceptual learning in the developing auditory cortex JO - Eur J Neurosci VL - 41 ID - Bao2015 ER - TY - JOUR AU - Kral, A. PY - 2013 DA - 2013// TI - Auditory critical periods: a review from system's perspective JO - Neuroscience. VL - 247 ID - Kral2013 ER - TY - JOUR AU - Villers-Sidani, E. AU - Merzenich, M. M. PY - 2011 DA - 2011// TI - Lifelong plasticity in the rat auditory cortex: basic mechanisms and role of sensory experience JO - Prog Brain Res. VL - 191 ID - Villers-Sidani2011 ER - TY - JOUR AU - Chun, S. AU - Bayazitov, I. T. AU - Blundon, J. A. AU - Zakharenko, S. S. PY - 2013 DA - 2013// TI - Thalamocortical long-term potentiation becomes gated after the early critical period in the auditory cortex JO - J Neurosci VL - 33 ID - Chun2013 ER - TY - JOUR AU - Barkat, T. R. AU - Polley, D. B. AU - Hensch, T. K. PY - 2011 DA - 2011// TI - A critical period for auditory thalamocortical connectivity JO - Nat Neurosci VL - 14 ID - Barkat2011 ER - TY - JOUR AU - Yang, E. J. AU - Lin, E. W. AU - Hensch, T. K. PY - 2012 DA - 2012// TI - Critical period for acoustic preference in mice JO - Proc Natl Acad Sci U S A. VL - 109 ID - Yang2012 ER - TY - JOUR AU - Hensch, T. K. PY - 2005 DA - 2005// TI - Critical period plasticity in local cortical circuits JO - Nat Rev Neurosci VL - 6 ID - Hensch2005 ER - TY - JOUR AU - Chang, E. H. AU - Kotak, V. C. AU - Sanes, D. H. PY - 2003 DA - 2003// TI - Long-term depression of synaptic inhibition is expressed postsynaptically in the developing auditory system JO - J Neurophysiol VL - 90 ID - Chang2003 ER - TY - JOUR AU - Oswald, A. M. AU - Reyes, A. D. PY - 2011 DA - 2011// TI - Development of inhibitory timescales in auditory cortex JO - Cereb Cortex VL - 21 ID - Oswald2011 ER - TY - JOUR AU - Venkataraman, Y. AU - Bartlett, E. L. PY - 2013 DA - 2013// TI - Postnatal development of synaptic properties of the GABAergic projection from the inferior colliculus to the auditory thalamus JO - J Neurophysiol VL - 109 ID - Venkataraman2013 ER - TY - JOUR AU - Sun, Y. J. AU - Wu, G. K. AU - Liu, B. H. AU - Li, P. AU - Zhou, M. AU - Xiao, Z. PY - 2010 DA - 2010// TI - Fine-tuning of pre-balanced excitation and inhibition during auditory cortical development JO - Nature VL - 465 ID - Sun2010 ER - TY - JOUR AU - Dorrn, A. L. AU - Yuan, K. AU - Barker, A. J. AU - Schreiner, C. E. AU - Froemke, R. C. PY - 2010 DA - 2010// TI - Developmental sensory experience balances cortical excitation and inhibition JO - Nature VL - 465 ID - Dorrn2010 ER - TY - JOUR AU - Kilgard, M. P. AU - Merzenich, M. M. PY - 1998 DA - 1998// TI - Plasticity of temporal information processing in the primary auditory cortex JO - Nat Neurosci VL - 1 ID - Kilgard1998 ER - TY - JOUR AU - Metherate, R. AU - Hsieh, C. Y. PY - 2003 DA - 2003// TI - Regulation of glutamate synapses by nicotinic acetylcholine receptors in auditory cortex JO - Neurobiol Learn Mem VL - 80 ID - Metherate2003 ER - TY - JOUR AU - Froemke, R. C. AU - Carcea, I. AU - Barker, A. J. AU - Yuan, K. AU - Seybold, B. A. AU - Martins, A. R. PY - 2013 DA - 2013// TI - Long-term modification of cortical synapses improves sensory perception JO - Nat Neurosci VL - 16 ID - Froemke2013 ER - TY - JOUR AU - Hurley, L. M. AU - Sullivan, M. R. PY - 2012 DA - 2012// TI - From behavioral context to receptors: serotonergic modulatory pathways in the IC JO - Front Neural Circ. VL - 6 ID - Hurley2012 ER - TY - JOUR AU - Bao, S. AU - Chan, V. T. AU - Merzenich, M. M. PY - 2001 DA - 2001// TI - Cortical remodelling induced by activity of ventral tegmental dopamine neurons JO - Nature VL - 412 ID - Bao2001 ER - TY - JOUR AU - Edeline, J. M. AU - Manunta, Y. AU - Hennevin, E. PY - 2011 DA - 2011// TI - Induction of selective plasticity in the frequency tuning of auditory cortex and auditory thalamus neurons by locus coeruleus stimulation JO - Hear Res VL - 274 ID - Edeline2011 ER - TY - JOUR AU - Brown, M. R. AU - Kaczmarek, L. K. PY - 2011 DA - 2011// TI - Potassium channel modulation and auditory processing JO - Hear Res VL - 279 ID - Brown2011 ER - TY - JOUR AU - Schachtele, S. J. AU - Losh, J. AU - Dailey, M. E. AU - Green, S. H. PY - 2011 DA - 2011// TI - Spine formation and maturation in the developing rat auditory cortex JO - J Comp Neurol VL - 519 ID - Schachtele2011 ER - TY - JOUR AU - Sutor, B. AU - Hagerty, T. PY - 2005 DA - 2005// TI - Involvement of gap junctions in the development of the neocortex JO - Biochimica et biophysica acta VL - 1719 ID - Sutor2005 ER - TY - JOUR AU - O'Neil, J. N. AU - Connelly, C. J. AU - Limb, C. J. AU - Ryugo, D. K. PY - 2011 DA - 2011// TI - Synaptic morphology and the influence of auditory experience JO - Hear Res VL - 279 ID - O'Neil2011 ER - TY - JOUR AU - Yu, W. M. AU - Goodrich, L. V. PY - 2014 DA - 2014// TI - Morphological and physiological development of auditory synapses JO - Hear Res. VL - 311 ID - Yu2014 ER - TY - JOUR AU - Sugiyama, S. AU - Nardo, A. A. AU - Aizawa, S. AU - Matsuo, I. AU - Volovitch, M. AU - Prochiantz, A. PY - 2008 DA - 2008// TI - Experience-dependent transfer of Otx2 homeoprotein into the visual cortex activates postnatal plasticity JO - Cell VL - 134 ID - Sugiyama2008 ER - TY - JOUR AU - Ehmann, H. AU - Hartwich, H. AU - Salzig, C. AU - Hartmann, N. AU - Clement-Ziza, M. AU - Ushakov, K. PY - 2013 DA - 2013// TI - Time-dependent gene expression analysis of the developing superior olivary complex JO - J Biol Chem VL - 288 ID - Ehmann2013 ER - TY - JOUR AU - Kaltwasser, B. AU - Schulenborg, T. AU - Beck, F. AU - Klotz, M. AU - Schafer, K. H. AU - Schmitt, M. PY - 2013 DA - 2013// TI - Developmental changes of the protein repertoire in the rat auditory brainstem: a comparative proteomics approach in the superior olivary complex and the inferior colliculus with DIGE and iTRAQ JO - J Proteomics. VL - 79 ID - Kaltwasser2013 ER - TY - JOUR AU - Holt, A. G. AU - Asako, M. AU - Lomax, C. A. AU - MacDonald, J. W. AU - Tong, L. AU - Lomax, M. I. PY - 2005 DA - 2005// TI - Deafness-related plasticity in the inferior colliculus: gene expression profiling following removal of peripheral activity JO - J Neurochem VL - 93 ID - Holt2005 ER - TY - JOUR AU - Clarkson, C. AU - Herrero-Turrion, M. J. AU - Merchan, M. A. PY - 2012 DA - 2012// TI - Cortical auditory deafferentation induces long-term plasticity in the inferior colliculus of adult rats: microarray and qPCR analysis JO - Front Neural Circuits. VL - 6 ID - Clarkson2012 ER - TY - JOUR AU - Hackett, T. A. AU - Barkat, T. R. AU - O'Brien, B. M. AU - Hensch, T. K. AU - Polley, D. B. PY - 2011 DA - 2011// TI - Linking topography to tonotopy in the mouse auditory thalamocortical circuit JO - J Neurosci VL - 31 ID - Hackett2011 ER - TY - JOUR AU - Horng, S. AU - Kreiman, G. AU - Ellsworth, C. AU - Page, D. AU - Blank, M. AU - Millen, K. PY - 2009 DA - 2009// TI - Differential gene expression in the developing lateral geniculate nucleus and medial geniculate nucleus reveals novel roles for Zic4 and Foxp2 in visual and auditory pathway development JO - J Neurosci VL - 29 ID - Horng2009 ER - TY - JOUR AU - Guo, Y. AU - Ye, F. AU - Sheng, Q. AU - Clark, T. AU - Samuels, D. C. PY - 2013 DA - 2013// TI - Three-stage quality control strategies for DNA re-sequencing data JO - Brief Bioinform ID - Guo2013 ER - TY - JOUR AU - Guo, Y. AU - Zhao, S. AU - Sheng, Q. AU - Ye, F. AU - Li, J. AU - Lehmann, B. PY - 2014 DA - 2014// TI - Multi-perspective quality control of Illumina exome sequencing data using QC3 JO - Genomics VL - 103 ID - Guo2014 ER - TY - JOUR AU - Guo, Y. AU - Zhao, S. AU - Ye, F. AU - Sheng, Q. AU - Shyr, Y. PY - 2014 DA - 2014// TI - MultiRankSeq: multiperspective approach for RNAseq differential expression analysis and quality control JO - Biomed Res Int VL - 2014 ID - Guo2014 ER - TY - JOUR AU - Kim, D. AU - Pertea, G. AU - Trapnell, C. AU - Pimentel, H. AU - Kelley, R. AU - Salzberg, S. L. PY - 2013 DA - 2013// TI - TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions JO - Genome Biol VL - 14 ID - Kim2013 ER - TY - JOUR AU - Anders, S. AU - Pyl, P. T. AU - Huber, W. PY - 2014 DA - 2014// TI - HTSeq-a Python framework to work with high-throughput sequencing data JO - Bioinformatics ID - Anders2014 ER - TY - JOUR AU - Zhao, S. AU - Guo, Y. AU - Sheng, Q. AU - Shyr, Y. PY - 2014 DA - 2014// TI - Advanced heat map and clustering analysis using heatmap3 JO - Biomed Res Int VL - 2014 ID - Zhao2014 ER - TY - JOUR AU - Anders, S. AU - Huber, W. PY - 2010 DA - 2010// TI - Differential expression analysis for sequence count data JO - Genome Biol VL - 11 ID - Anders2010 ER - TY - JOUR AU - Robinson, M. D. AU - McCarthy, D. J. AU - Smyth, G. K. PY - 2010 DA - 2010// TI - edgeR: a Bioconductor package for differential expression analysis of digital gene expression data JO - Bioinformatics VL - 26 ID - Robinson2010 ER - TY - JOUR AU - Hardcastle, T. J. AU - Kelly, K. A. PY - 2010 DA - 2010// TI - baySeq: empirical Bayesian methods for identifying differential expression in sequence count data JO - BMC Bioinformatics. VL - 11 ID - Hardcastle2010 ER - TY - JOUR AU - Dillies, M. A. AU - Rau, A. AU - Aubert, J. AU - Hennequet-Antier, C. AU - Jeanmougin, M. AU - Servant, N. PY - 2013 DA - 2013// TI - A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis JO - Brief Bioinform VL - 14 ID - Dillies2013 ER - TY - JOUR AU - Kvam, V. M. AU - Liu, P. AU - Si, Y. PY - 2012 DA - 2012// TI - A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data JO - Am J Botany VL - 99 ID - Kvam2012 ER - TY - JOUR AU - Robles, J. A. AU - Qureshi, S. E. AU - Stephen, S. J. AU - Wilson, S. R. AU - Burden, C. J. AU - Taylor, J. M. PY - 2012 DA - 2012// TI - Efficient experimental design and analysis strategies for the detection of differential expression using RNA-Sequencing JO - BMC Genomics. VL - 13 ID - Robles2012 ER - TY - JOUR AU - Soneson, C. AU - Delorenzi, M. PY - 2013 DA - 2013// TI - A comparison of methods for differential expression analysis of RNA-seq data JO - BMC Bioinformatics. VL - 14 ID - Soneson2013 ER - TY - JOUR AU - Guo, Y. AU - Li, C. I. AU - Ye, F. AU - Shyr, Y. PY - 2013 DA - 2013// TI - Evaluation of read count based RNAseq analysis methods JO - BMC Genomics. VL - 14 Suppl 8 ID - Guo2013 ER - TY - STD TI - Hackett TA, Takahata T, Clause AR, Hackett NJ, Polley DB. Differential maturation of vesicular glutamate and GABA transporter expression in the mouse auditory forebrain during the first weeks of hearing. Brain Structure & Function. 2015:in press. ID - ref53 ER - TY - JOUR AU - Subramanian, A. AU - Tamayo, P. AU - Mootha, V. K. AU - Mukherjee, S. AU - Ebert, B. L. AU - Gillette, M. A. PY - 2005 DA - 2005// TI - Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles JO - Proc Natl Acad Sci U S A VL - 102 ID - Subramanian2005 ER - TY - JOUR AU - Gray, K. A. AU - Yates, B. AU - Seal, R. L. AU - Wright, M. W. AU - Bruford, E. A. PY - 2015 DA - 2015// TI - Genenames.org: the HGNC resources in 2015 JO - Nucleic Acids Res VL - 43 ID - Gray2015 ER - TY - JOUR AU - Blake, J. A. AU - Bult, C. J. AU - Eppig, J. T. AU - Kadin, J. A. AU - Richardson, J. E. PY - 2014 DA - 2014// TI - Mouse genome database G. The mouse genome database: integration of and access to knowledge about the laboratory mouse JO - Nucleic Acids Res VL - 42 ID - Blake2014 ER - TY - JOUR AU - Matsumoto, Y. AU - Katayama, K. AU - Okamoto, T. AU - Yamada, K. AU - Takashima, N. AU - Nagao, S. PY - 2011 DA - 2011// TI - Impaired auditory-vestibular functions and behavioral abnormalities of Slitrk6-deficient mice JO - PLoS One VL - 6 ID - Matsumoto2011 ER - TY - JOUR AU - Tekin, M. AU - Chioza, B. A. AU - Matsumoto, Y. AU - Diaz-Horta, O. AU - Cross, H. E. AU - Duman, D. PY - 2013 DA - 2013// TI - SLITRK6 mutations cause myopia and deafness in humans and mice JO - J Clin Invest VL - 123 ID - Tekin2013 ER - TY - JOUR AU - Aruga, J. AU - Mikoshiba, K. PY - 2003 DA - 2003// TI - Identification and characterization of Slitrk, a novel neuronal transmembrane protein family controlling neurite outgrowth JO - Mol Cell Neurosci VL - 24 ID - Aruga2003 ER - TY - JOUR AU - Beaubien, F. AU - Cloutier, J. F. PY - 2009 DA - 2009// TI - Differential expression of Slitrk family members in the mouse nervous system JO - Dev Dynamics VL - 238 ID - Beaubien2009 ER - TY - JOUR AU - Eagleson, K. L. AU - Milner, T. A. AU - Xie, Z. AU - Levitt, P. PY - 2013 DA - 2013// TI - Synaptic and extrasynaptic location of the receptor tyrosine kinase met during postnatal development in the mouse neocortex and hippocampus JO - J Comp Neurol VL - 521 ID - Eagleson2013 ER - TY - JOUR AU - Qiu, S. AU - Lu, Z. AU - Levitt, P. PY - 2014 DA - 2014// TI - MET receptor tyrosine kinase controls dendritic complexity, spine morphogenesis, and glutamatergic synapse maturation in the hippocampus JO - J Neurosci VL - 34 ID - Qiu2014 ER - TY - JOUR AU - O'Leary, D. D. AU - Sahara, S. PY - 2008 DA - 2008// TI - Genetic regulation of arealization of the neocortex JO - Curr Opin Neurobiol VL - 18 ID - O'Leary2008 ER - TY - JOUR AU - Takesian, A. E. AU - Hensch, T. K. PY - 2013 DA - 2013// TI - Balancing plasticity/stability across brain development JO - Prog Brain Res. VL - 207 ID - Takesian2013 ER - TY - JOUR AU - Warde-Farley, D. AU - Donaldson, S. L. AU - Comes, O. AU - Zuberi, K. AU - Badrawi, R. AU - Chao, P. PY - 2010 DA - 2010// TI - The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function JO - Nucleic Acids Res. VL - 38 ID - Warde-Farley2010 ER - TY - JOUR AU - Mostafavi, S. AU - Ray, D. AU - Warde-Farley, D. AU - Grouios, C. AU - Morris, Q. PY - 2008 DA - 2008// TI - GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function JO - Genome Biol. VL - 9 Suppl 1 ID - Mostafavi2008 ER - TY - JOUR AU - Holmes, S. E. AU - O'Hearn, E. AU - Rosenblatt, A. AU - Callahan, C. AU - Hwang, H. S. AU - Ingersoll-Ashworth, R. G. PY - 2001 DA - 2001// TI - A repeat expansion in the gene encoding junctophilin-3 is associated with Huntington disease-like 2 JO - Nat Genet VL - 29 ID - Holmes2001 ER - TY - JOUR AU - Wilburn, B. AU - Rudnicki, D. D. AU - Zhao, J. AU - Weitz, T. M. AU - Cheng, Y. AU - Gu, X. PY - 2011 DA - 2011// TI - An antisense CAG repeat transcript at JPH3 locus mediates expanded polyglutamine protein toxicity in Huntington's disease-like 2 mice JO - Neuron VL - 70 ID - Wilburn2011 ER - TY - JOUR AU - Nakanishi, K. AU - Aono, S. AU - Hirano, K. AU - Kuroda, Y. AU - Ida, M. AU - Tokita, Y. PY - 2006 DA - 2006// TI - Identification of neurite outgrowth-promoting domains of neuroglycan C, a brain-specific chondroitin sulfate proteoglycan, and involvement of phosphatidylinositol 3-kinase and protein kinase C signaling pathways in neuritogenesis JO - J Biol Chem VL - 281 ID - Nakanishi2006 ER - TY - JOUR AU - Lein, E. S. AU - Hawrylycz, M. J. AU - Ao, N. AU - Ayres, M. AU - Bensinger, A. AU - Bernard, A. PY - 2007 DA - 2007// TI - Genome-wide atlas of gene expression in the adult mouse brain JO - Nature VL - 445 ID - Lein2007 ER - TY - JOUR AU - Ko, Y. AU - Ament, S. A. AU - Eddy, J. A. AU - Caballero, J. AU - Earls, J. C. AU - Hood, L. PY - 2013 DA - 2013// TI - Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain JO - Proc Natl Acad Sci U S A VL - 110 ID - Ko2013 ER - TY - JOUR AU - Bernard, A. AU - Lubbers, L. S. AU - Tanis, K. Q. AU - Luo, R. AU - Podtelezhnikov, A. A. AU - Finney, E. M. PY - 2012 DA - 2012// TI - Transcriptional architecture of the primate neocortex JO - Neuron VL - 73 ID - Bernard2012 ER - TY - JOUR AU - Borello, U. AU - Pierani, A. PY - 2010 DA - 2010// TI - Patterning the cerebral cortex: traveling with morphogens JO - Curr Opin Genet Dev VL - 20 ID - Borello2010 ER - TY - JOUR AU - Rash, B. G. AU - Grove, E. A. PY - 2006 DA - 2006// TI - Area and layer patterning in the developing cerebral cortex JO - Curr Opin Neurobiol VL - 16 ID - Rash2006 ER - TY - JOUR AU - Virgintino, D. AU - Perissinotto, D. AU - Girolamo, F. AU - Mucignat, M. T. AU - Montanini, L. AU - Errede, M. PY - 2009 DA - 2009// TI - Differential distribution of aggrecan isoforms in perineuronal nets of the human cerebral cortex JO - J Cell Mol Med VL - 13 ID - Virgintino2009 ER - TY - JOUR AU - Matthews, R. T. AU - Kelly, G. M. AU - Zerillo, C. A. AU - Gray, G. AU - Tiemeyer, M. AU - Hockfield, S. PY - 2002 DA - 2002// TI - Aggrecan glycoforms contribute to the molecular heterogeneity of perineuronal nets JO - J Neurosci VL - 22 ID - Matthews2002 ER - TY - JOUR AU - Ye, Q. AU - Miao, Q. L. PY - 2013 DA - 2013// TI - Experience-dependent development of perineuronal nets and chondroitin sulfate proteoglycan receptors in mouse visual cortex JO - Matrix Biol VL - 32 ID - Ye2013 ER - TY - JOUR AU - Morawski, M. AU - Bruckner, G. AU - Arendt, T. AU - Matthews, R. T. PY - 2012 DA - 2012// TI - Aggrecan: Beyond cartilage and into the brain JO - Int J Biochem Cell Biol VL - 44 ID - Morawski2012 ER - TY - JOUR AU - Hockfield, S. AU - Kalb, R. G. AU - Zaremba, S. AU - Fryer, H. PY - 1990 DA - 1990// TI - Expression of neural proteoglycans correlates with the acquisition of mature neuronal properties in the mammalian brain JO - Cold Spring Harb Symp Quant Biol. VL - 55 ID - Hockfield1990 ER - TY - JOUR AU - Sur, M. AU - Frost, D. O. AU - Hockfield, S. PY - 1988 DA - 1988// TI - Expression of a surface-associated antigen on Y-cells in the cat lateral geniculate nucleus is regulated by visual experience JO - J Neurosci VL - 8 ID - Sur1988 ER - TY - JOUR AU - Vazdarjanova, A. AU - McNaughton, B. L. AU - Barnes, C. A. AU - Worley, P. F. AU - Guzowski, J. F. PY - 2002 DA - 2002// TI - Experience-dependent coincident expression of the effector immediate-early genes arc and Homer 1a in hippocampal and neocortical neuronal networks JO - J Neurosci VL - 22 ID - Vazdarjanova2002 ER - TY - JOUR AU - Yuge, K. AU - Kataoka, A. AU - Yoshida, A. C. AU - Itoh, D. AU - Aggarwal, M. AU - Mori, S. PY - 2011 DA - 2011// TI - Region-specific gene expression in early postnatal mouse thalamus JO - J Comp Neurol VL - 519 ID - Yuge2011 ER - TY - JOUR AU - Sato, H. AU - Fukutani, Y. AU - Yamamoto, Y. AU - Tatara, E. AU - Takemoto, M. AU - Shimamura, K. PY - 2012 DA - 2012// TI - Thalamus-derived molecules promote survival and dendritic growth of developing cortical neurons JO - J Neurosci VL - 32 ID - Sato2012 ER - TY - JOUR AU - Lyckman, A. W. AU - Horng, S. AU - Leamey, C. A. AU - Tropea, D. AU - Watakabe, A. AU - Wart, A. PY - 2008 DA - 2008// TI - Gene expression patterns in visual cortex during the critical period: synaptic stabilization and reversal by visual deprivation JO - Proc Natl Acad Sci U S A VL - 105 ID - Lyckman2008 ER - TY - JOUR AU - Bandtlow, C. E. AU - Zimmermann, D. R. PY - 2000 DA - 2000// TI - Proteoglycans in the developing brain: new conceptual insights for old proteins JO - Physiol Rev VL - 80 ID - Bandtlow2000 ER - TY - JOUR AU - Yamaguchi, Y. PY - 2000 DA - 2000// TI - Lecticans: organizers of the brain extracellular matrix JO - Cell Mol Life Sci VL - 57 ID - Yamaguchi2000 ER - TY - JOUR AU - Kwok, J. C. AU - Warren, P. AU - Fawcett, J. W. PY - 2012 DA - 2012// TI - Chondroitin sulfate: a key molecule in the brain matrix JO - Int J Biochem Cell Biol VL - 44 ID - Kwok2012 ER - TY - JOUR AU - Giamanco, K. A. AU - Matthews, R. T. PY - 2012 DA - 2012// TI - Deconstructing the perineuronal net: cellular contributions and molecular composition of the neuronal extracellular matrix JO - Neuroscience. VL - 218 ID - Giamanco2012 ER - TY - JOUR AU - Wang, D. AU - Fawcett, J. PY - 2012 DA - 2012// TI - The perineuronal net and the control of CNS plasticity JO - Cell Tissue Res VL - 349 ID - Wang2012 ER - TY - JOUR AU - Bartus, K. AU - James, N. D. AU - Bosch, K. D. AU - Bradbury, E. J. PY - 2012 DA - 2012// TI - Chondroitin sulphate proteoglycans: key modulators of spinal cord and brain plasticity JO - Exp Neurol VL - 235 ID - Bartus2012 ER - TY - JOUR AU - Beurdeley, M. AU - Spatazza, J. AU - Lee, H. H. AU - Sugiyama, S. AU - Bernard, C. AU - Nardo, A. A. PY - 2012 DA - 2012// TI - Otx2 binding to perineuronal nets persistently regulates plasticity in the mature visual cortex JO - J Neurosci VL - 32 ID - Beurdeley2012 ER - TY - JOUR AU - McRae, P. A. AU - Rocco, M. M. AU - Kelly, G. AU - Brumberg, J. C. AU - Matthews, R. T. PY - 2007 DA - 2007// TI - Sensory deprivation alters aggrecan and perineuronal net expression in the mouse barrel cortex JO - J Neurosci VL - 27 ID - McRae2007 ER - TY - JOUR AU - Carulli, D. AU - Pizzorusso, T. AU - Kwok, J. C. AU - Putignano, E. AU - Poli, A. AU - Forostyak, S. PY - 2010 DA - 2010// TI - Animals lacking link protein have attenuated perineuronal nets and persistent plasticity JO - Brain VL - 133 ID - Carulli2010 ER - TY - JOUR AU - Lee, J. S. AU - Chien, C. B. PY - 2004 DA - 2004// TI - When sugars guide axons: insights from heparan sulphate proteoglycan mutants JO - Nat Rev Genet VL - 5 ID - Lee2004 ER - TY - JOUR AU - Fox, A. N. AU - Zinn, K. PY - 2005 DA - 2005// TI - The heparan sulfate proteoglycan syndecan is an in vivo ligand for the Drosophila LAR receptor tyrosine phosphatase JO - Curr Biol VL - 15 ID - Fox2005 ER - TY - JOUR AU - Aricescu, A. R. AU - McKinnell, I. W. AU - Halfter, W. AU - Stoker, A. W. PY - 2002 DA - 2002// TI - Heparan sulfate proteoglycans are ligands for receptor protein tyrosine phosphatase sigma JO - Mol Cell Biol VL - 22 ID - Aricescu2002 ER - TY - JOUR AU - Avram, S. AU - Shaposhnikov, S. AU - Buiu, C. AU - Mernea, M. PY - 2014 DA - 2014// TI - Chondroitin sulfate proteoglycans: structure-function relationship with implication in neural development and brain disorders JO - Biomed Res Int. VL - 2014 ID - Avram2014 ER - TY - JOUR AU - Bruckner, G. AU - Seeger, G. AU - Brauer, K. AU - Hartig, W. AU - Kacza, J. AU - Bigl, V. PY - 1994 DA - 1994// TI - Cortical areas are revealed by distribution patterns of proteoglycan components and parvalbumin in the Mongolian gerbil and rat JO - Brain Res VL - 658 ID - Bruckner1994 ER - TY - JOUR AU - Pizzorusso, T. AU - Medini, P. AU - Berardi, N. AU - Chierzi, S. AU - Fawcett, J. W. AU - Maffei, L. PY - 2002 DA - 2002// TI - Reactivation of ocular dominance plasticity in the adult visual cortex JO - Science VL - 298 ID - Pizzorusso2002 ER - TY - JOUR AU - Zhou, X. H. AU - Brakebusch, C. AU - Matthies, H. AU - Oohashi, T. AU - Hirsch, E. AU - Moser, M. PY - 2001 DA - 2001// TI - Neurocan is dispensable for brain development JO - Mol Cell Biol VL - 21 ID - Zhou2001 ER - TY - JOUR AU - Meyer-Puttlitz, B. AU - Milev, P. AU - Junker, E. AU - Zimmer, I. AU - Margolis, R. U. AU - Margolis, R. K. PY - 1995 DA - 1995// TI - Chondroitin sulfate and chondroitin/keratan sulfate proteoglycans of nervous tissue: developmental changes of neurocan and phosphacan JO - J Neurochem VL - 65 ID - Meyer-Puttlitz1995 ER - TY - JOUR AU - Felipe, J. AU - Marco, P. AU - Fairen, A. AU - Jones, E. G. PY - 1997 DA - 1997// TI - Inhibitory synaptogenesis in mouse somatosensory cortex JO - Cereb Cortex VL - 7 ID - Felipe1997 ER - TY - JOUR AU - Micheva, K. D. AU - Beaulieu, C. PY - 1996 DA - 1996// TI - Quantitative aspects of synaptogenesis in the rat barrel field cortex with special reference to GABA circuitry JO - J Comp Neurol VL - 373 ID - Micheva1996 ER - TY - JOUR AU - Goldman, J. S. AU - Ashour, M. A. AU - Magdesian, M. H. AU - Tritsch, N. X. AU - Harris, S. N. AU - Christofi, N. PY - 2013 DA - 2013// TI - Netrin-1 promotes excitatory synaptogenesis between cortical neurons by initiating synapse assembly JO - J Neurosci VL - 33 ID - Goldman2013 ER - TY - STD TI - Han L, Vickers KC, Samuels DC, Guo Y. Alternative applications for distinct RNA sequencing strategies. Brief Bioinform. 2014. doi:10.1093/bib/bbu032. ID - ref105 ER - TY - JOUR AU - McGettigan, P. A. PY - 2013 DA - 2013// TI - Transcriptomics in the RNA-seq era JO - Curr Opin Chem Biol VL - 17 ID - McGettigan2013 ER - TY - JOUR AU - Sengupta, S. AU - Bolin, J. M. AU - Ruotti, V. AU - Nguyen, B. K. AU - Thomson, J. A. AU - Elwell, A. L. PY - 2011 DA - 2011// TI - Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA JO - J Vis Exp VL - 56 ID - Sengupta2011 ER - TY - JOUR AU - Pollock, J. D. AU - Wu, D. Y. AU - Satterlee, J. S. PY - 2014 DA - 2014// TI - Molecular neuroanatomy: a generation of progress JO - Trends Neurosci VL - 37 ID - Pollock2014 ER - TY - JOUR AU - Sun, W. AU - Zhang, L. AU - Lu, J. AU - Yang, G. AU - Laundrie, E. AU - Salvi, R. PY - 2008 DA - 2008// TI - Noise exposure-induced enhancement of auditory cortex response and changes in gene expression JO - Neuroscience VL - 156 ID - Sun2008 ER - TY - JOUR AU - Sharma, V. AU - Nag, T. C. AU - Wadhwa, S. AU - Roy, T. S. PY - 2009 DA - 2009// TI - Temporal distribution of mRNA expression levels of various genes in the developing human inferior colliculus JO - Neurosci Lett VL - 461 ID - Sharma2009 ER - TY - JOUR AU - Bush, A. L. AU - Hyson, R. L. PY - 2008 DA - 2008// TI - Effects of lithium and deafferentation on expression of glycogen synthase kinase-3beta, NFkappaB, beta-catenin and pCreb in the chick cochlear nucleus JO - Brain Res. VL - 1203 ID - Bush2008 ER - TY - JOUR AU - Wang, H. AU - Brozoski, T. J. AU - Turner, J. G. AU - Ling, L. AU - Parrish, J. L. AU - Hughes, L. F. PY - 2009 DA - 2009// TI - Plasticity at glycinergic synapses in dorsal cochlear nucleus of rats with behavioral evidence of tinnitus JO - Neuroscience VL - 164 ID - Wang2009 ER - TY - JOUR AU - Wang, H. AU - Turner, J. G. AU - Ling, L. AU - Parrish, J. L. AU - Hughes, L. F. AU - Caspary, D. M. PY - 2009 DA - 2009// TI - Age-related changes in glycine receptor subunit composition and binding in dorsal cochlear nucleus JO - Neuroscience VL - 160 ID - Wang2009 ER - TY - JOUR AU - Mashiko, H. AU - Yoshida, A. C. AU - Kikuchi, S. S. AU - Niimi, K. AU - Takahashi, E. AU - Aruga, J. PY - 2012 DA - 2012// TI - Comparative anatomy of marmoset and mouse cortex from genomic expression JO - J Neurosci VL - 32 ID - Mashiko2012 ER - TY - JOUR AU - Nehme, B. AU - Henry, M. AU - Mouginot, D. AU - Drolet, G. PY - 2012 DA - 2012// TI - The Expression Pattern of the Na(+) Sensor, Na(X) in the Hydromineral Homeostatic Network: A Comparative Study between the Rat and Mouse JO - Front Neuroanat. VL - 6 ID - Nehme2012 ER - TY - JOUR AU - Zee, E. A. AU - Keijser, J. N. PY - 2011 DA - 2011// TI - Localization of pre- and postsynaptic cholinergic markers in rodent forebrain: a brief history and comparison of rat and mouse JO - Behav Brain Res VL - 221 ID - Zee2011 ER - TY - JOUR AU - Watakabe, A. AU - Komatsu, Y. AU - Sadakane, O. AU - Shimegi, S. AU - Takahata, T. AU - Higo, N. PY - 2009 DA - 2009// TI - Enriched expression of serotonin 1B and 2A receptor genes in macaque visual cortex and their bidirectional modulatory effects on neuronal responses JO - Cereb Cortex VL - 19 ID - Watakabe2009 ER - TY - JOUR AU - Zeng, H. AU - Shen, E. H. AU - Hohmann, J. G. AU - Oh, S. W. AU - Bernard, A. AU - Royall, J. J. PY - 2012 DA - 2012// TI - Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures JO - Cell VL - 149 ID - Zeng2012 ER - TY - JOUR AU - Shukla, R. AU - Watakabe, A. AU - Yamamori, T. PY - 2014 DA - 2014// TI - mRNA expression profile of serotonin receptor subtypes and distribution of serotonergic terminations in marmoset brain JO - Front Neural Circuits VL - 8 ID - Shukla2014 ER - TY - JOUR AU - Lin, S. AU - Lin, Y. AU - Nery, J. R. AU - Urich, M. A. AU - Breschi, A. AU - Davis, C. A. PY - 2014 DA - 2014// TI - Comparison of the transcriptional landscapes between human and mouse tissues JO - Proc Natl Acad Sci U S A VL - 111 ID - Lin2014 ER - TY - JOUR AU - Pongrac, J. AU - Middleton, F. A. AU - Lewis, D. A. AU - Levitt, P. AU - Mirnics, K. PY - 2002 DA - 2002// TI - Gene expression profiling with DNA microarrays: advancing our understanding of psychiatric disorders JO - Neurochem Res VL - 27 ID - Pongrac2002 ER - TY - JOUR AU - Grange, P. AU - Bohland, J. W. AU - Okaty, B. W. AU - Sugino, K. AU - Bokil, H. AU - Nelson, S. B. PY - 2014 DA - 2014// TI - Cell-type-based model explaining coexpression patterns of genes in the brain JO - Proc Natl Acad Sci U S A VL - 111 ID - Grange2014 ER - TY - JOUR AU - Hirokawa, J. AU - Watakabe, A. AU - Ohsawa, S. AU - Yamamori, T. PY - 2008 DA - 2008// TI - Analysis of area-specific expression patterns of RORbeta, ER81 and Nurr1 mRNAs in rat neocortex by double in situ hybridization and cortical box method JO - PLoS One VL - 3 ID - Hirokawa2008 ER -