Fig. 3

Copy number variants identified. For each chromosome both unique calls and recurrent regions are plotted. The unique calls are plotted for each chromosome as follows (listed from top to bottom): copy number amplification calls for three or more copies are plotted in dark blue above the region of the chromosome where they are found, the chromosome line in black, followed by one copy deletions in light red and full deletions in dark red below the chromosome line. The regions of recurrent CNV calls are plotted directly on the black chromosome line. Here, if the overlapping calls were all deletions, they are plotted in red; If they were all amplifications they are plotted in blue; If they are a mix of amplifications and deletions they are plotted in green