Genomic copy number variation in Mus musculus

BMC Genomics

Table 1 Number of CNV calls on the autosomes by mouse classification and copy number state

Mouse classification	Number of samples	CNV calls		Copy number state^a						Del/amp^b
Mouse classification	Number of samples	CNV calls		0		1		3+		Del/amp^b
All	334	9634	(28.84)	1995	(5.97)	3661	(10.96)	3978	(11.91)	1.42
Classical	114	2824	(24.77)	424	(3.72)	867	(7.61)	1533	(13.45)	0.84
Wild Derived	52	2611	(50.21)	1214	(23.35)	594	(11.42)	803	(15.44)	2.25
Wild Caught	19	969	(51.0)	231	(12.15)	491	(25.84)	247	(13.0)	2.92
C57BL/6 J	8	90	(11.52)	0	(0.0)	38	(4.75)	52	(6.5)	0.73
C57BL/6NJ	6	46	(7.67)	5	(0.83)	23	(3.83)	18	(3.0)	1.56

Values in parentheses are normalized by sample count
^a Copy number 0 is a full deletion, or no copies, then 1 copy, then 3 or more copies respectively
^b Deletion/Amplification is the total number of deletions (0 and 1 copy-state call counts) divided by the number of amplifications (3+ copy-state call counts)

ISSN: 1471-2164