Genome-wide identification and Phylogenic analysis of kelch motif containing ACBP in Brassica napus

BMC Genomics

Table 2 Comparison of amino acid sequence identity in AtACBPs, BrACBPs, BoACBPs and BnACBPs. Numbers are in percent (%)

Class	BnACBPs	AtACBPs		BrACBPs				BoACBPs
Small		At1g31812		Bra033875	Bra038439	Bra023206		Bol038626	Bol027060	Bol005980
	BnaAnng25690D	80.4		83.9	87	100		84.9	84.8	97.8
	BnaA05g36060D	83.7		98.9	94.6	84.9		97.8	92.4	84.9
	BnaA08G07670D	82.6		93.5	100	87		92.4	97.8	87.4
	BnaCnng15340D	83.7		96.7	92.4	84.9		100	90.2	84.9
Ankyrin		At5g53470	At4g27780	Bra026307		Bra022656		Bol013113		Bol017188
repeats	BnaA02g10270D	86.1	73.8	70.1		98.8		69.9		94.7
	BnaC02g44810D	87.5	73.9	71.2		95		71		100
	BnaA01g16660D	70.8	84.3	97.8		71.8		96.2		72.1
	BnaC01g20440D	70.3	84.3	97.3		70.9		97.8		71.8
Large		At4g24230		Bra013778		Bra019240		Bol009564		Bol042158
	BnaA01g13710D	62.9		97.4		64.9		85.3		64.4
	BnaA03g46540D	58.5		65.8		99.7		63.7		88.7
	BnaC01g16110D	58.6		84.1		63		94.9		62.4
	BnaC07g38820D	59		66.2		90.1		63.6		93.4
Kelch		At3g05420	At5g27630	Bra020582	Bra001147	Bra039439	Bra040219	Bol012774	Bol001638	Bol002733	Bol034106
motif	AIS76194	90	75.7	75.6	96.5	90.6	89.7	76.3	90.4	90.4	95.9
	AIS76195	91.8	76.9	77.5	89.3	99.3	90.4	77.4	98.5	90.4	90.8
	AIS76196	90.1	75.5	75.3	89.5	90.3	98.2	75.3	90.4	100	90.3
	AIS76197	78.2	81.6	96.4	75.1	76.9	74.6	99.6	77.7	75.5	76.6
	AIS76198	77	81.2	97.6	73.5	76.8	74	95.4	77.1	74.3	75
	AIS76199	88.8	74.8	75	95.5	90	88.9	75.7	89.7	89.7	96.4
	AIS76200	91.5	76.5	77.4	89.2	99.3	90.1	77	98.2	90.6	90.7
	AIS76201	91	76	76.2	89.2	92.7	96.1	76.2	92.8	97.6	90.1

ISSN: 1471-2164