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Fig. 2 | BMC Genomics

Fig. 2

From: Use of the de novo transcriptome analysis of silver-leaf nightshade (Solanum elaeagnifolium) to identify gene expression changes associated with wounding and terpene biosynthesis

Fig. 2

Alignment of S. elaeagnifolium deduced amino acid sequences with their related tomato proteins. a Tomato TPS9, TPS10 and TPS12 and the cl7653 predicted protein alignment. TPS9 (also called SST1) and TPS12 (also called CAHS) are closely related. Transcript cl7653 from S. elaeagnifolium resembles both and TPS10. The motif DDxxD, engaged in cofactor binding is fully conserved in the four proteins. The NSE/DTE motif is present as (N,D)DIVGHE(D,V,H)E following its general form (N, D)D(L, I, V)X(S, T)XXXE [61]; the fifth amino acid is a glycine (G) instead of serine (S) or threonine (T). The alignment was created by ClustalW and edited with Jalview. Amino acids that share the same coloring have similar biochemical properties. b Tomato TPS24 and cl1310 predicted protein alignment. The parts of the alignment depicted contain the motifs DDxxD (highlighted in red) and NSE/DTE (highlighted in green)

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BMC Genomics

ISSN: 1471-2164

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