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Table 2 The 20 most expressed genes in S.elaeagnifolium leaves and flowers

From: Use of the de novo transcriptome analysis of silver-leaf nightshade (Solanum elaeagnifolium) to identify gene expression changes associated with wounding and terpene biosynthesis

S.elaeagnifolium transcript

Length (nt)

Annotation (species)

FPKM

cl588

962

Rubisco small subunit (SOLTU)

7,060.3

cl3504

1,874

Rubisco activase (chloroplast) (CAPAN)

6,226.3

unigene21118

774

PR4 leaf-precursor (SOLLC)

5,695.6

unigene17928

861

Non-specific lipid-transfer protein 2-like (SOLLC)

4,544.6

cl644

1,089

Chlorophyll a-b binding protein 3C chloroplastic-like (SOLTU)

3,960.1

cl6611

921

Photosystem II 10 kDa polypeptide chloroplastic (SOLTU)

3,372.1

unigene12950

946

Non-specific lipid-transfer protein 1-like (SOLTU)

3,007.7

cl8797

1,470

Plastidic aldolase (SOLTU)

2,583.8

unigene17653

1,550

Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like (SOLTU)

2,355.9

unigene680

711

Cell wall protein precursor (SOLLC)

2,343.6

cl9787_2

602

HT-protein (SOLPE)

2,243.7

unigene11345

861

Ferredoxin-1, chloroplastic-like (SOLTU)

1,916.8

unigene22300

602

Metallothionein-like protein (CAPCH)

1,870.0

cl7445

1,732

Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 (SOLLC)

1,573.3

cl9785

858

PR1 precursor/PR1a (SOLLC)

1,493.1

cl10244

1,884

SAMDC (SOLTU)

1,433.5

unigene18624

790

Photosystem I reaction center V (chloroplast) (SOLTU)

1,374.2

unigene7695

730

Photosystem II reaction center W protein, chloroplastic-like (SOLTU)

1,359.1

unigene22352

1,690

Phosphoribulokinase, chloroplastic-like (SOLTU)

1,332.0

unigene12941

480

Metallothionein (SOLNI)

1,311.0

  1. The annotation (third column) is based on the annotation of the top hit produced by Blastx searches at the NCBI protein database. All top hits are Solanaceae proteins (species abbreviations by Uniprot). FPKM (fragments per kilobase of exon per million fragments mapped) values produced by RSEM software (fourth column)