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Table 2 The 20 most expressed genes in S.elaeagnifolium leaves and flowers

From: Use of the de novo transcriptome analysis of silver-leaf nightshade (Solanum elaeagnifolium) to identify gene expression changes associated with wounding and terpene biosynthesis

S.elaeagnifolium transcript Length (nt) Annotation (species) FPKM
cl588 962 Rubisco small subunit (SOLTU) 7,060.3
cl3504 1,874 Rubisco activase (chloroplast) (CAPAN) 6,226.3
unigene21118 774 PR4 leaf-precursor (SOLLC) 5,695.6
unigene17928 861 Non-specific lipid-transfer protein 2-like (SOLLC) 4,544.6
cl644 1,089 Chlorophyll a-b binding protein 3C chloroplastic-like (SOLTU) 3,960.1
cl6611 921 Photosystem II 10 kDa polypeptide chloroplastic (SOLTU) 3,372.1
unigene12950 946 Non-specific lipid-transfer protein 1-like (SOLTU) 3,007.7
cl8797 1,470 Plastidic aldolase (SOLTU) 2,583.8
unigene17653 1,550 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like (SOLTU) 2,355.9
unigene680 711 Cell wall protein precursor (SOLLC) 2,343.6
cl9787_2 602 HT-protein (SOLPE) 2,243.7
unigene11345 861 Ferredoxin-1, chloroplastic-like (SOLTU) 1,916.8
unigene22300 602 Metallothionein-like protein (CAPCH) 1,870.0
cl7445 1,732 Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 (SOLLC) 1,573.3
cl9785 858 PR1 precursor/PR1a (SOLLC) 1,493.1
cl10244 1,884 SAMDC (SOLTU) 1,433.5
unigene18624 790 Photosystem I reaction center V (chloroplast) (SOLTU) 1,374.2
unigene7695 730 Photosystem II reaction center W protein, chloroplastic-like (SOLTU) 1,359.1
unigene22352 1,690 Phosphoribulokinase, chloroplastic-like (SOLTU) 1,332.0
unigene12941 480 Metallothionein (SOLNI) 1,311.0
  1. The annotation (third column) is based on the annotation of the top hit produced by Blastx searches at the NCBI protein database. All top hits are Solanaceae proteins (species abbreviations by Uniprot). FPKM (fragments per kilobase of exon per million fragments mapped) values produced by RSEM software (fourth column)