Table 3 The S. elaeagnifolium putative orthologs of tomato genes involved in the MVA, MEP pathways, the prenyl phosphate metabolism and the biosynthesis of polyisoprenoids
Tomato/Potato Gene ID | Leaf | Flower | S.elaeagnifolium putative ortholog | FPKM |
|---|---|---|---|---|
AACT Solyc05g017760 | 19.5 | 22.7 | cl7898.contig1 + 2 | 11.3 |
AACT Solyc07g045350 | 3.3 | 13.4 | cl7898.contig3 | 53.2 |
cl7898.contig4 | 14.4 | |||
HMGS Solyc08g007790 | 18.5 | 14.2 | cl4122.contig2 + unigene12243 | 5.2 |
+unigene15765 + unigene15766 | ||||
HMGS Solyc08g080170 | 25.3 | 33.3 | cl4122.contig3 | 41.7 |
HMGR1 Solyc02g082260 | 11.8 | 86.6 | cl1634.contig1 | 25.6 |
cl1634.contig2 | 58.1 | |||
cl1634.contig4 | 38.1 | |||
HMGR2 Solyc02g038740 (HMG2)/PGSC0003DMP400006164 | 1.1 | 49.8 | cl1634.contig3 (90 %) | 285.8 |
HMGR Solyc03g032010 | 15.3 | 44.9 | unigene23036 + unigene23038 | 16.4 |
MVK Solyc01g098840 | 12.7 | 9.6 | unigene21441 | 31.8 |
PMK Solyc08g076140 | 6.7 | 10.9 | cl9083.contig2 + unigene25409 | 7.4 |
MVD Solyc11g007020 | 14.7 | 25.9 | cl9530.contig2 | 40.4 |
MVD Solyc04g009650 | 5.6 | 13.5 | unigene12676 + unigene32872 | 1.8 |
IDI Solyc04g056390 | 61.5 | 193.5 | cl5610.contig1 | 98.5 |
IDI Solyc05g055760 | 16.0 | 21.7 | unigene22921 | 37.5 |
FPS1 Solyc12g015860 | 51.0 | 51.9 | cl2768.contig1 (91 %) | 117.9 |
unigene28826 (88 %) | 24.9 | |||
FPS Solyc10g005810 | 3.5 | 4.7 | unigene6739 | 51.5 |
DXS Solyc01g067890 | 142.3 | 116.4 | unigene22809 (96.7 %) | 91.1 |
DXS2 Solyc11g010850 | 27.6 | 459.2 | unigene2314 (92 %) | 146.6 |
DXR Solyc03g114340 | 126.2 | 382.9 | unigene24922 | 107.5 |
MCT Solyc01g102820 (CMS) | 19.3 | 31.9 | cl4081.contig1 | 0.8 |
cl4081.contig2 | 1.3 | |||
cl4081.contig3 | 0 | |||
cl4081.contig4 | 20.4 | |||
CMK Solyc01g009010 (ISPE) | 25.5 | 38.9 | cl7176.contig1 | 19.0 |
MDS Solyc08g081570 | 56.6 | 30.5 | unigene15434 | 63.2 |
HDS Solyc11g069380 (GcpE) | 135.3 | 541.6 | unigene21842 | 220.3 |
HDR Solyc01g109300 | 218.8 | 204.9 | unigene23731 | 386.2 |
GGPS Solyc02g085700 | 61.3 | 163.4 | unigene9264 | 284.8 |
GGPS Solyc09g008920 | 80.3 | 124.6 | unigene20920 | 48.9 |
GGPS2 Solyc04g079960 | 18.3 | 69.9 | unigene23673 | 18.2 |
GGPS Solyc09g008920 | 80.3 | 124.6 | unigene20920 | 48.9 |
GPS Solyc08g023470 | 23.9 | 20.7 | unigene17628 | 2.6 |
CPT3 Solyc03g025560 | 8.5 | 8.6 | cl6749.contig1 | 8.0 |
CPT4 Solyc10g085150 | 5.4 | 5.9 | cl6054.contig2 | 10.7 |
CPT5 Solyc10g085140 | 24.1 | 120.9 | cl6054.contig4 | 159.7 |
CPT7 Solyc06g076920 | 15.8 | 2.2 | unigene38545 | 0.3 |