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Table 3 The S. elaeagnifolium putative orthologs of tomato genes involved in the MVA, MEP pathways, the prenyl phosphate metabolism and the biosynthesis of polyisoprenoids

From: Use of the de novo transcriptome analysis of silver-leaf nightshade (Solanum elaeagnifolium) to identify gene expression changes associated with wounding and terpene biosynthesis

Tomato/Potato Gene ID Leaf Flower S.elaeagnifolium putative ortholog FPKM
AACT Solyc05g017760 19.5 22.7 cl7898.contig1 + 2 11.3
AACT Solyc07g045350 3.3 13.4 cl7898.contig3 53.2
cl7898.contig4 14.4
HMGS Solyc08g007790 18.5 14.2 cl4122.contig2 + unigene12243 5.2
+unigene15765 + unigene15766
HMGS Solyc08g080170 25.3 33.3 cl4122.contig3 41.7
HMGR1 Solyc02g082260 11.8 86.6 cl1634.contig1 25.6
cl1634.contig2 58.1
cl1634.contig4 38.1
HMGR2 Solyc02g038740 (HMG2)/PGSC0003DMP400006164 1.1 49.8 cl1634.contig3 (90 %) 285.8
HMGR Solyc03g032010 15.3 44.9 unigene23036 + unigene23038 16.4
MVK Solyc01g098840 12.7 9.6 unigene21441 31.8
PMK Solyc08g076140 6.7 10.9 cl9083.contig2 + unigene25409 7.4
MVD Solyc11g007020 14.7 25.9 cl9530.contig2 40.4
MVD Solyc04g009650 5.6 13.5 unigene12676 + unigene32872 1.8
IDI Solyc04g056390 61.5 193.5 cl5610.contig1 98.5
IDI Solyc05g055760 16.0 21.7 unigene22921 37.5
FPS1 Solyc12g015860 51.0 51.9 cl2768.contig1 (91 %) 117.9
unigene28826 (88 %) 24.9
FPS Solyc10g005810 3.5 4.7 unigene6739 51.5
DXS Solyc01g067890 142.3 116.4 unigene22809 (96.7 %) 91.1
DXS2 Solyc11g010850 27.6 459.2 unigene2314 (92 %) 146.6
DXR Solyc03g114340 126.2 382.9 unigene24922 107.5
MCT Solyc01g102820 (CMS) 19.3 31.9 cl4081.contig1 0.8
cl4081.contig2 1.3
cl4081.contig3 0
cl4081.contig4 20.4
CMK Solyc01g009010 (ISPE) 25.5 38.9 cl7176.contig1 19.0
MDS Solyc08g081570 56.6 30.5 unigene15434 63.2
HDS Solyc11g069380 (GcpE) 135.3 541.6 unigene21842 220.3
HDR Solyc01g109300 218.8 204.9 unigene23731 386.2
GGPS Solyc02g085700 61.3 163.4 unigene9264 284.8
GGPS Solyc09g008920 80.3 124.6 unigene20920 48.9
GGPS2 Solyc04g079960 18.3 69.9 unigene23673 18.2
GGPS Solyc09g008920 80.3 124.6 unigene20920 48.9
GPS Solyc08g023470 23.9 20.7 unigene17628 2.6
CPT3 Solyc03g025560 8.5 8.6 cl6749.contig1 8.0
CPT4 Solyc10g085150 5.4 5.9 cl6054.contig2 10.7
CPT5 Solyc10g085140 24.1 120.9 cl6054.contig4 159.7
CPT7 Solyc06g076920 15.8 2.2 unigene38545 0.3
  1. The tomato leaf and flower RPKMs are provided by tomato functional genomics database (TFGD) (http://ted.bti.cornell.edu/) based on cv. “Heinz” RNA-sequencing (RNA-seq) data. S. elaeagnifolium unigenes in bold have full length similarity (%) to tomato genes. FPKM values by RSEM software