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Table 2 Numbers of DE genes for the different comparisons

From: Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection

 

Comparison

# of DE genes (FDR = 0.10)

WG effect

HvHg-HvLg contrast on 4dpi

0

HvHg-HvLg contrast on 7dpi

0

LvHg-LvLg contrast on 4dpi

2

LvHg-LvLg contrast on 7dpi

709

VL effect

HvHg-LvHg contrast on 4dpi

0

HvHg-LvHg contrast on 7dpi

0

HvLg-LvLg contrast on 4dpi

2

HvLg-LvLg contrast on 7dpi

0

WG and VL interaction effect

(HvHg-HvLg)-(LvHg-LvLg) contrast on 4dpi

1

(HvHg-HvLg)-(LvHg-LvLg) contrast on 7dpi

0

day effect

4dpi-0dpi contrast

239

7dpi-0dpi contrast

165

genotype effect

genotype (AB vs AA) contrast on 4dpi

0

genotype (AB vs AA) contrast on 7dpi

0

  1. Comparisons were made for a WG, VL, day and genotype effect. The FDR was set at 0.10