(A) Illumina sequencing – quantitative overview | |||
 | Immune challenged | Non-immune challenged | |
Sequencing | Paired end 2 x 50Â bp | ||
Total number of reads | 125,873,897 | 118,142,837 | |
Median insert length (bp) | 176Â bp | 163Â bp | |
Overall mapping rate | 87.4Â % | 88.6Â % | |
Mapping to Camponotus genome | 99.45Â % | 99.37Â % | |
Mapping to Blochmannia genome | 0.55Â % | 0.63Â % | |
(B) Repeats distribution | |||
 | Number of elements | Length occupied | Percentage of sequence |
LTR elements | 662 | 445,584Â bp | 0.19Â % |
DNA elements | 163 | 44,183Â bp | 0.02Â % |
Unclassified | 41,722 | 14,401,396Â bp | 6.13Â % |
Total interspersed repeats | - | 14,891,163Â bp | 6.34Â % |
Small RNA | 26 | 13,938Â bp | 0.01Â % |
Satellites | 50 | 9914Â bp | 0.00Â % |
Simple repeats | 67,608 | 3,996,593Â bp | 1.70Â % |
Low complexity | 284,104 | 15,360,412Â bp | 6.54Â % |