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Table 4 Percentiles of absolute read ratios

From: Analyzing allele specific RNA expression using mixture models

SNP category

Min

10 %

20 %

30 %

40 %

50 %

60 %

70 %

80 %

90 %

Max

617 AEI signal SNPs

1.14

1.54

1.71

1.88

2.08

2.32

2.64

3.06

3.67

4.85

9

10,085 SNPs mixture

1

1.05

1.13

1.2

1.29

1.4

1.54

1.71

2

2.5

9.67

  1. Absolute read ratios were calculated using the formula Max(reference, variant)/Min(reference, variant). The 617 AEI signal SNPs were designated according to the largest mixture probability. The remaining 10,085 SNPs included 10 % uncertain AEI signal SNPs and 84 % no AEI signal SNPs
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BMC Genomics

ISSN: 1471-2164

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