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Table 1 Summary of Gene Ontology Analysis of differentially expressed gene lists. The analysis is based on D. melanogaster orthologs matching honey bee genes that were significantly differentially expressed between treatment groups. Only GO terms and KEGG pathways that were significantly overrepresented (medium stringency, P-value < 0.05) are shown in the table. Benjamini corrections for multiple testing are provided alongside corresponding P-values

From: RNA-sequencing elucidates the regulation of behavioural transitions associated with the mating process in honey bee queens

 

Category

Term

Genes

P-Value

Benjamini

mated vs. virgin

 

carbohydrate metabolic process

30

3.33E-05

0.022

 

organic acid metabolic process

27

1.79E-04

0.076

 

amine metabolic process

26

1.00E-03

0.209

 

defense response

11

0.009

0.778

 

sensory perception

15

0.011

0.782

 

melanization defense response

3

0.012

0.764

biological process

cellular amino acid metabolic process

16

0.015

0.76

 

fatty acid metabolic process

7

0.015

0.737

 

innate immune response

7

0.015

0.737

 

carbohydrate catabolic process

8

0.017

0.752

 

tissue development

30

0.026

0.805

 

detection of stimulus

8

0.04

0.805

 

sodium ion transport

6

0.041

0.794

cellular component

myofibril

5

0.002

0.035

 

membrane part

81

0.003

0.046

 

proteinaceous extracellular matrix

7

0.006

0.071

 

plasma membrane

39

0.009

0.093

 

cofactor binding

19

7.91E-05

0.022

 

monooxygenase activity

12

0.002

0.151

 

lipase activity

10

0.004

0.214

 

FAD binding

8

0.005

0.227

 

vitamin binding

10

0.008

0.259

molecular function

sugar transmembrane transporter activity

5

0.014

0.29

 

transcription factor activity

23

0.018

0.325

 

receptor activity

27

0.018

0.318

 

transforming growth beta receptor binding

3

0.023

0.336

 

identical protein binding

11

0.03

0.368

 

sulfate transmembrane transporter activity

3

0.037

0.424

metabolic pathways

Starch and sucrose metabolism

7

0.003

0.081

 

Glycolysis / Gluconeogenesis

7

0.004

0.061

 

Retinol metabolism

5

0.006

0.058

 

Arginine and proline metabolism

7

0.006

0.051

 

beta-Alanine metabolism

5

0.013

0.087

 

Lysine ddegradation

5

0.05

0.192

mated vs. CO2

biological processes

aromatic amino acid family process

5

0.003

0.757

 

sensory perception

11

0.024

0.995

 

monocarboxylic acid metabolic process

7

0.031

0.992

 

tissue development

22

0.032

0.987

 

response to organic substance

8

0.044

0.992

cellular component

membrane

70

1.00E-03

0.014

 

muscle myosin complex

3

0.004

0.053

 

extracellular region part

8

0.032

0.255

molecular function

sugar transmembrane transporter activity

5

0.006

0.222

 

transporter activity

33

0.007

0.246

 

retinal binding

3

0.018

0.394

 

lipase activity

6

0.033

0.545

 

olfactory receptor activity

5

0.037

0.551

CO2 vs. virgin

biological process

cognition

7

0.004

0.105

cellular component

rhabdomere

4

1.00E-03

0.01

 

membrane

21

0.001

0.012

 

cell projection

5

0.004

0.039

 

integral to membrane

12

0.056

0.333

molecular function

monooxygenase activity

5

3.09E-04

0.054

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BMC Genomics

ISSN: 1471-2164

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