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Table 2 Comparison of RNA-seq and qRT-PCR results

From: Transcriptional analysis of susceptible and resistant European corn borer strains and their response to Cry1F protoxin

Transcript

Comparison

RNA seq Fold change

RT-PCR Fold change

comp30419_c0_seq3

Susceptible Vs Resistant

89.6x up in susceptible

92x up in susceptible

comp55172_c0_seq1

Susceptible Vs Resistant

311.2x up in resistant

16x up in resistant

comp4659_c0_seq1

Susceptible Vs Resistant

10x up in susceptible

8x up in susceptible

comp53943_c0_seq1

Susceptible Vs Resistant

248x up in susceptible

98x up in susceptible

comp32281_c0_seq1

Susceptible Vs Bt treated

116.3x up in susceptible

90x up in susceptible

comp52754_c0_seq1

Susceptible Vs Bt treated

59.5x up in susceptible

90x up in susceptible

comp28866_c0_seq1

Susceptible Vs Bt treated

33.1x up in Bt treated

75x up in Bt treated

comp29067_c0_seq1

Susceptible Vs Bt treated

33.2x up in Bt treated

85x up in Bt treated