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Table 1 Details of all polymorphic loci, including frequency of the most common allele across all silver eel (SE) and glass eel (GE) samples

From: Signatures of natural selection between life cycle stages separated by metamorphosis in European eel

Locus Gene Ireland Iceland Spain
   SE GE SE GE SE GE
40S_S18_1401 40s ribosomal protein s18 0.829 0.846 0.828 0.807 0.838 0.750
60S_L10A_21874 60s ribosomal protein L10a 0.846 0.782 0.776 0.839 0.775 0.779
ACT_A3B_8646 Actinin alpha 3b 1.000 1.000 1.000 1.000 1.000 1.000
ACTB_21752 Beta-actin 0.788 0.808 0.906 0.862 0.863 0.886
ACYL_13914 Acyl carrier protein 0.750 0.776 0.758 0.823 0.738 0.826
ADH_3 Alcohol dehydrogenase class-3 0.737 0.859 0.733 0.690 0.795 0.761
ADSS_L1_15447 Adenylosuccinate synthetase isozyme 1 1.000 0.987 1.000 0.984 1.000 1.000
ALD_R Aldose reductase 0.759 0.838 --- 0.537 0.859 0.936
ALDH_2_16634 Aldehyde dehydrogenase 2 0.638 0.763 0.600 0.550 0.688 0.682
ANK_R_13478 Ankyrin repeat domain-comtaining protein 1 1.000 1.000 1.000 1.000 1.000 1.000
ANN_A11_16176 Annexin A11 0.897 0.923 0.807 0.919 0.900 0.852
ANX_2_249 Annexin A2-A 0.987 0.949 1.000 0.983 0.975 1.000
ARF_4_18099 ADP-ribsylation factor 4 0.987 1.000 0.969 0.983 0.988 0.977
ATP_BC_259 ATP-bindincasette sub-family A member 1 1.000 1.000 1.000 1.000 0.988 0.989
BPNT_1_18778 3'(5'),5'-biphosphate nucleotidase 1 0.971 1.000 0.985 1.000 1.000 1.000
CLIC_5_10148 Chloride intracellular channel 5 0.568 0.487 0.521 0.492 0.521 0.492
COI_17591 Cytochrome oxidase subunit I 1.000 1.000 1.000 1.000 1.000 1.000
COP_9_18132 266S protease regulatory subunit 7 0.950 0.962 0.968 0.968 0.988 0.966
CSDE_1_11069 Cold shock domain-containing protein E1 1.000 1.000 1.000 1.000 1.000 1.000
CSDE_1_19713 Cold shock domain-containing protein E1 0.950 1.000 0.968 0.983 0.963 0.977
CST_21113 Cystatin precursor 0.782 0.597 0.726 0.661 0.775 0.750
CYT_BC1_9061 Cytochrome b-c1 complex subunit 2 1.000 1.000 1.000 1.000 1.000 1.000
EF_1G_4796 Translation elongation factor 1 gamma 1.000 1.000 1.000 1.000 1.000 1.000
EF2_10494 Translation elongation factor 2 1.000 1.000 1.000 1.000 1.000 1.000
EIF_3F_341 Translation elongation factor 3 subunit F 0.872 0.892 0.967 0.967 0.910 0.932
EIF_3J_11587 Translation elongation factor 3 subunit J 0.963 0.974 0.940 0.968 0.950 0.930
FER_H_20955 Ferritin heavy subunit 0.988 1.000 1.000 0.983 1.000 1.000
FGB_47 Fibrinogen Beta Chain 1.000 1.000 1.000 1.000 1.000 1.000
GAPDH_20355 Glyceraldehyde-3-phoshpate dehydrogenase 0.962 0.962 0.969 0.589 0.974 1.000
GDE1_2508 Glycerophosphochlorine phosphodiesterase 1.000 1.000 1.000 1.000 1.000 1.000
GOG_B1_15792 Golgin sub-family B member 1 0.987 0.987 0.970 0.968 1.000 0.966
GPX_4_19607 Glutathione peroxidase 4 1.000 1.000 1.000 1.000 1.000 1.000
HMG_T_9973 High mobility group-T protein 0.988 0.988 1.000 0.984 0.988 0.966
HSP_90A_15666 Heat shock protein 90 alpha 0.988 0.949 0.984 0.968 0.988 0.977
HSP_90B_21100 Heat shock protein 90 beta 0.895 0.949 0.966 0.984 1.000 1.000
HSPE_1_17854 10 kDa heat shock protein 1.000 1.000 1.000 0.984 1.000 1.000
IF_RF2_19747 Interferon regulatory factor 2 1.000 1.000 1.000 1.000 1.000 1.000
JAM_3_13916 Junctional adhesion molecule 3b 0.938 0.885 0.984 0.952 0.950 0.893
KRT_13_20618 Keratin 0.808 0.795 0.821 0.783 0.800 0.796
KRT_A_15738 Keratin alpha-like 0.975 1.000 0.952 0.984 0.960 0.988
LBL_L2_20921 No hit 1.000 1.000 1.000 1.000 1.000 1.000
LDH_B_9441 Lactase dehydrogenase B 1.000 1.000 0.952 0.950 1.000 1.000
MDH_1393 Malate dehydrogenase 0.449 0.592 0.567 0.603 0.615 0.476
MYH_14857 Superfast myosin heavy chain 0.514 0.473 0.500 0.516 0.425 0.489
NADH_4_21742 NADH dehydrogenase subunit 4 1.000 1.000 1.000 1.000 1.000 1.000
NADH_5_17101 NADH dehydrogenase subunit 5 0.974 1.000 1.000 1.000 1.000 0.977
NADH1_10_21119 NADH dehydrogenase 1 alpha subunit 10 1.000 1.000 1.000 1.000 1.000 1.000
NCP_2_15547 Nucleolar complex protein 2 0.974 0.934 1.000 0.967 0.962 0.932
NEX_19953 Nexilin 0.592 0.608 0.485 0.567 0.577 0.523
NGD_21138 Neuroguidin 0.795 0.842 0.906 0.758 0.825 0.852
NRAP_1541 Nebulin-related anchoring protein 1.000 0.987 0.984 1.000 0.988 0.989
PA2G4_2600 Proliferation associated protein 2G4 0.663 0.645 0.652 0.550 0.575 0.580
PFN_15113 Profilin-2 1.000 1.000 1.000 1.000 1.000 1.000
PGD_18096 6-phosphogluconate dehydrogenase 0.987 0.961 0.969 0.967 0.988 0.966
PGI_1 Phosphoglucose isomerase-1 0.800 0.797 0.742 0.750 0.675 0.807
PGI_2 Phosphoglucose isomerase-2 0.552 0.566 0.553 0.500 0.625 0.556
PGK_1_11454 Phosphoglycerate kinase 1 0.947 0.961 0.909 0.903 0.975 0.939
PRP_40_16504 Pre-mRNA-processing factor 40 homolog A 0.829 0.842 0.833 0.903 0.846 0.845
PSA_4_21534 Proteasome subunit alpha type-4 0.513 0.434 0.550 0.550 0.590 0.432
PSME_1_21196 Proteasome activator 0.719 0.583 - 0.621 0.625 0.667
RFC_3_18186 Replication factor C subunit 3 0.763 0.776 0.773 0.717 0.800 0.784
RTF_1_21288 RNA polymerase-associated protein RTF1 0.756 0.724 0.900 0.758 0.846 0.750
SDH_O Sorbitol dehydrogenase 1.000 1.000 1.000 1.000 1.000 1.000
SLC_25A5_19808 ADP/ATP translocase 2 1.000 1.000 0.967 0.984 1.000 1.000
SM_22_6449 Transgelin 0.963 0.934 0.946 0.952 0.950 0.955
SN4_TDR_374 Taphylococcal nuclease domain-containing protein 0.962 0.910 0.919 0.862 0.888 0.909
TENT_02_11046 No hit 0.744 0.711 0.739 0.774 0.713 0.784
TENT_03_12589 Collagen type XXVIII alpha 1 a 0.949 0.987 1.000 0.968 0.988 0.966
TENT_05_19704 No hit 1.000 0.987 0.968 0.983 1.000 1.000
TENT_06_16512 Protein Phosphatase regulatory subunit 0.603 0.581 0.600 0.533 0.575 0.625
TENT_07_21161 No hit 0.419 0.368 0.348 0.397 0.350 0.286
TNNT_2E_20968 Troponin T2e 0.949 0.885 0.913 0.875 0.838 0.895
TRIM_35_8416 Tripartite motif-contaning protein 35 0.692 0.658 0.750 0.629 0.641 0.698
TTN_B_20952 Titin b 1.000 1.000 1.000 1.000 1.000 1.000
TUB_A_19211 Tubulin alpha 2 1.000 1.000 1.000 1.000 1.000 1.000
UBI_A52_5049 Ubiquitin A-52 ribosomal protein fusion product 1 0.987 0.974 0.967 0.917 1.000 0.989
UGP_2_2128 UDP-glucose pyrophosphorylase 2 0.671 0.541 0.531 0.690 0.663 0.546
UGP_A_2307 Glycerol-3-phosphate transporter subunit 0.671 0.603 0.600 0.613 0.600 0.636
UNA_SINE2_16912 Eel Short interspersed elements 1.000 1.000 1.000 1.000 1.000 1.000
ZETA_15177 Tyr 3-monooxygenase 0.739 0.865 0.810 0.783 0.756 0.852