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Table 1 Chromosome and Supercontig sequence coverage of the F. graminearum PH-1 isolate and MIPS reference. Identification of underrepresented repeating sequences represented in the MIPS reference sequence could be calculated by dividing the total corrected average observed coverage by the original sequencing depth of 85.

From: The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum

MIPS Chromosome/Supercontig number Length (bp) Raw average coverageb Bases with coverage (%)c Corrected average coveraged Calculated multiples of supercontig sequences in genomee
1 11,694,295 79.5 100.0 79.5 1
2 8,911,601 90.7 99.6 90.3 1
3 7,711,129 90.4 95.5 86.3 1
4 8,029,942 70.6 91.8 64.8 1
4: 7,953,943+ bpa 75,973 1,000.2 77.8 778.16 9
3.13 12,585 1,083 96 1,039.7 12
3.18 8,774 930.3 99 921 11
3.2 7,037 1,000.6 91.3 913.5 11
3.29 2,326 731.9 95 695.3 8
3.28 2,628 687.8 98.1 674.7 8
3.3 2,172 573.5 99.2 568.9 7
3.22 6,062 573.5 75.5 433 5
3.24 6,000 557.4 73.5 409.7 5
3.23 6,331 541.4 74.2 401.7 5
3.21 7,489 551.3 78.2 431.1 5
3.25 6,524 368.1 63 231.9 3
3.15 10,471 96.7 100 96.7 1
3.31 2,080 85.8 100 85.8 1
3.26 2,996 95.7 100 95.7 1
3.12 15,604 438.9 99.4 436.3 5
  1. aChromosome 4 from 7,953,943 bp onwards, this is the start of the repeating RNA annotated sequence
  2. bThe read depth observed across the length of the sequence
  3. cPercentage of bases that are A,C,T,G but not N
  4. dThe calculated N bp corrected coverage
  5. eThe number of copies of the sequence that should be represented in the reference sequence