Table 1 Summary of read numbers and alignment based on the RNA-Seq data. C = control, S4 = challenged with Serratia proteamaculans, AS13 = challenged with Serratia plymuthica, R1, R2, R3 are three biological replicates

C_R1

11,095,432

9,331,561 (84.1 %)

874,389 (9.4 %)

9,329,491 (84.1 %)

876,749 (9.4 %)

9,094,851

81.9 %

C_R2

11,494,727

9,617,041 (83.7 %)

860,263 (8.9 %)

9,616,430 (83.7 %)

862,125 (9.0 %)

9,363,011

81.4 %

C_R3

12,225,022

10,176,425 (83.2 %)

949,473 (9.3 %)

10,175,088 (83.2 %)

952,599 (9.4 %)

9,904,261

80.9 %

S4_R1

9,357,641

7,717,332 (82.5 %)

746,407 (9.7 %)

7,715,127 (82.4 %)

749,440 (9.7 %)

7,505,336

80.1 %

S4_R2

11,669,755

9,654,736 (82.7 %)

983,020 (10.2 %)

9,653,409 (82.7 %)

985,993 (10.2 %)

9,394,327

80.4 %

S4_R3

11,739,231

9,611,162 (81.9 %)

934,484 (9.7 %)

9,609,086 (81.9 %)

936,772 (9.7 %)

9,355,791

79.6 %

AS13_R1

12,188,851

10,163,886 (83.4 %)

1,032,695 (10.2 %)

10,160,009 (83.4 %)

1,034,346 (10.2 %)

9,893,969

81.1 %

AS13_R2

12,456,782

10,346,804 (83.1 %)

968,441 (9.4 %)

10,346,410 (83.1 %)

969,736 (9.4 %)

10,078,070

80.8 %

AS13_R3

12,277,378

10,116,891 (82.4 %)

945,375 (9.3 %)

10,115,612 (82.4 %)

951,473 (9.4 %)

9,856,584

80.2 %