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Table 1 Maximum match between polytropic murine leukemia retrovirus (Pmv) and each next generation sequenced MLV region, in 5 mice

From: Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse

Reference MLV region C3H LP/J SJL Mmd1 Mmd2
Pmv1 1 100 100 100 99.5 100
  2,3 100 100 99.7 99.7 100
  5 100 100 100 99.5 100
  6 99.8 99.8 99.8 99.8 100
Pmv5 1 100 100 100 99.5 100
  2,3 100 100 99.7 99.7 100
  5 100 100 100 99.5 100
  6 99.8 99.8 99.8 99.8 100
Pmv7 1 99.8 100 99.3 99.1 99.5
  2,3 100 100 100 100 100
  5 100 100 100 99.5 100
  6 100 100 100 99.8 100
Pmv8 1 100 100 96.4 99.3 99.8
  2,3 100 100 99.7 99.7 99.7
  5 100 100 100 99.5 100
  6 100 100 100 99.8 100
Pmv9 1 100 100 100 99.5 100
  2,3 99.7 99.7 99.5 99.5 99.7
  5 100 99.5 100 99.7 99.5
  6 99.3 99.3 99.5 98.8 99.3
Pmv10 1 100 100 99.5 99.1 100
  2,3 100 100 99.7 99.7 100
  5 100 100 100 99.5 100
  6 100 100 99.8 99.5 99.8
Pmv11 1 100 100 100 99.5 100
  2,3 100 100 99.7 99.7 100
  5 100 100 100 99.5 100
  6 99.8 100 99.5 99.5 99.8
Pmv12 1 100 100 99.8 99.3 100
  2,3 99.5 99.7 99.5 99.5 99.5
  5 100 100 100 99.5 100
  6 100 100 100 99.8 100
Pmv13 1 100 99.5 99.3 98.8 100
  2,3 100 100 100 100 100
  5 100 100 100 99.5 100
  6 99.8 99.8 99.5 99.5 100
Pmv14 1 100 99.8 99.5 99.3 100
  2,3 100 100 99.7 98.9 100
  5 100 100 99.7 99.2 100
  6 100 99.8 99.8 99.5 100
Pmv15 1 99.8 100 99.5 99.3 99.5
  2,3 99.5 99.5 99.5 99.5 99.5
  5 100 100 100 99.5 100
  6 100 100 100 99.8 100
Pmv16 1 100 100 100 99.5 100
  2,3 100 100 100 100 100
  5 100 100 100 99.5 100
  6 99.8 99.8 99.8 99.8 100
Pmv18 1 100 100 100 99.5 100
  2,3 99.5 99.7 99.5 99.5 99.5
  5 100 100 100 99.5 100
  6 99.8 100 99.8 99.5 99.8
Pmv19 1 100 100 100 99.5 100
  2,3 100 100 100 100 100
  5 100 100 100 99.5 100
  6 100 100 100 99.8 100
Pmv20 1 100 100 99.8 99.3 100
  2,3 100 99.5 99.5 99.2 99.5
  5 100 100 100 99.5 100
  6 99.8 100 99.5 99.5 100
Pmv21 1 99.5 99.8 99.3 98.8 99.5
  2,3 99.5 99.5 99.7 99.5 99.7
  5 100 100 100 99.5 100
  6 99.8 99.8 99.8 99.8 100
Pmv22 1 100 100 100 99.5 100
  2,3 99.7 99.7 99.7 99.7 99.7
  5 100 100 100 99.5 100
  6 99.8 100 99.8 99.5 99.8
Pmv23 1 99.3 100 99.5 98.6 99.1
  2,3 98.9 98.9 99.2 98.9 99.2
  5 99.7 100 99.7 99.2 99.7
  6 99.8 100 99.3 99.3 99.8
Pmv24 1 100 100 99.8 99.3 100
  2,3 100 100 100 100 100
  5 100 100 100 99.5 100
  6 99.8 100 99.5 99.5 100
  1. The use of boldface indicates that sequences with 100% identity to a reference were detected for all MLV target regions in a mouse. The Pmv reference sequences are those of Bamunusinghe et al. [4]