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Table 1 Maximum match between polytropic murine leukemia retrovirus (Pmv) and each next generation sequenced MLV region, in 5 mice

From: Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse

Reference

MLV region

C3H

LP/J

SJL

Mmd1

Mmd2

Pmv1

1

100

100

100

99.5

100

 

2,3

100

100

99.7

99.7

100

 

5

100

100

100

99.5

100

 

6

99.8

99.8

99.8

99.8

100

Pmv5

1

100

100

100

99.5

100

 

2,3

100

100

99.7

99.7

100

 

5

100

100

100

99.5

100

 

6

99.8

99.8

99.8

99.8

100

Pmv7

1

99.8

100

99.3

99.1

99.5

 

2,3

100

100

100

100

100

 

5

100

100

100

99.5

100

 

6

100

100

100

99.8

100

Pmv8

1

100

100

96.4

99.3

99.8

 

2,3

100

100

99.7

99.7

99.7

 

5

100

100

100

99.5

100

 

6

100

100

100

99.8

100

Pmv9

1

100

100

100

99.5

100

 

2,3

99.7

99.7

99.5

99.5

99.7

 

5

100

99.5

100

99.7

99.5

 

6

99.3

99.3

99.5

98.8

99.3

Pmv10

1

100

100

99.5

99.1

100

 

2,3

100

100

99.7

99.7

100

 

5

100

100

100

99.5

100

 

6

100

100

99.8

99.5

99.8

Pmv11

1

100

100

100

99.5

100

 

2,3

100

100

99.7

99.7

100

 

5

100

100

100

99.5

100

 

6

99.8

100

99.5

99.5

99.8

Pmv12

1

100

100

99.8

99.3

100

 

2,3

99.5

99.7

99.5

99.5

99.5

 

5

100

100

100

99.5

100

 

6

100

100

100

99.8

100

Pmv13

1

100

99.5

99.3

98.8

100

 

2,3

100

100

100

100

100

 

5

100

100

100

99.5

100

 

6

99.8

99.8

99.5

99.5

100

Pmv14

1

100

99.8

99.5

99.3

100

 

2,3

100

100

99.7

98.9

100

 

5

100

100

99.7

99.2

100

 

6

100

99.8

99.8

99.5

100

Pmv15

1

99.8

100

99.5

99.3

99.5

 

2,3

99.5

99.5

99.5

99.5

99.5

 

5

100

100

100

99.5

100

 

6

100

100

100

99.8

100

Pmv16

1

100

100

100

99.5

100

 

2,3

100

100

100

100

100

 

5

100

100

100

99.5

100

 

6

99.8

99.8

99.8

99.8

100

Pmv18

1

100

100

100

99.5

100

 

2,3

99.5

99.7

99.5

99.5

99.5

 

5

100

100

100

99.5

100

 

6

99.8

100

99.8

99.5

99.8

Pmv19

1

100

100

100

99.5

100

 

2,3

100

100

100

100

100

 

5

100

100

100

99.5

100

 

6

100

100

100

99.8

100

Pmv20

1

100

100

99.8

99.3

100

 

2,3

100

99.5

99.5

99.2

99.5

 

5

100

100

100

99.5

100

 

6

99.8

100

99.5

99.5

100

Pmv21

1

99.5

99.8

99.3

98.8

99.5

 

2,3

99.5

99.5

99.7

99.5

99.7

 

5

100

100

100

99.5

100

 

6

99.8

99.8

99.8

99.8

100

Pmv22

1

100

100

100

99.5

100

 

2,3

99.7

99.7

99.7

99.7

99.7

 

5

100

100

100

99.5

100

 

6

99.8

100

99.8

99.5

99.8

Pmv23

1

99.3

100

99.5

98.6

99.1

 

2,3

98.9

98.9

99.2

98.9

99.2

 

5

99.7

100

99.7

99.2

99.7

 

6

99.8

100

99.3

99.3

99.8

Pmv24

1

100

100

99.8

99.3

100

 

2,3

100

100

100

100

100

 

5

100

100

100

99.5

100

 

6

99.8

100

99.5

99.5

100

  1. The use of boldface indicates that sequences with 100% identity to a reference were detected for all MLV target regions in a mouse. The Pmv reference sequences are those of Bamunusinghe et al. [4]