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Table 2 Maximum match between polytropic murine leukemia retrovirus (Mpmv) and each next generation sequenced MLV region, in 5 mice

From: Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse

Reference MLV region C3H LP/J SJL Mmd1 Mmd2
Mpmv1 1 99.8 100 99.5 99.3 99.5
  2,3 99.7 100 99.7 99.7 100
  5 100 100 100 99.7 100
  6 99.5 100 99.8 99.3 100
Mpmv2 1 99.8 99 98.8 98.6 100
  2,3 100 100 99.5 99.5 100
  5 100 100 100 99.7 100
  6 100 99.8 99.5 99.5 99.8
Mpmv4 1 100 99.8 99.8 99.5 100
  2,3 100 99.7 99.5 99.5 99.7
  5 100 99.7 99.7 99.5 100
  6 100 100 100 100 100
Mpmv5 1 99.5 99.3 99.3 99 99.3
  2,3 98.9 98.9 98.9 98.7 99.2
  5 99.7 99.7 99.7 99.5 99.7
  6 99.3 99.3 99.3 99.3 99.3
Mpmv6 1 100 100 99.3 98.8 99.3
  2,3 100 100 99.5 99.5 99.7
  5 100 100 99.7 99.7 99.7
  6 99.8 99.3 98.6 98.6 98.8
Mpmv7 1 99.5 100 99 98.8 99.8
  2,3 100 100 99.7 99.7 100
  5 100 100 100 99.7 100
  6 100 100 99.8 99.8 100
Mpmv8 1 99.3 99 99 98.8 99.3
  2,3 100 99.7 99.5 99.2 99.5
  5 100 99.7 99.7 99.5 100
  6 100 100 100 100 100
Mpmv9 1 99.8 99 98.8 98.6 100
  2,3 100 100 99.5 99.5 100
  5 100 100 100 99.7 100
  6 100 99.8 99.8 99.8 100
Mpmv10 1 100 100 99.5 99.3 99.5
  2,3 100 100 99.5 99.5 99.7
  5 - - - - -
  6 100 100 99.5 99 99.3
Mpmv11 1 100 100 100 99.8 100
  2,3 100 100 99.7 99.7 100
  5 99.7 99.7 99.7 99.5 99.7
  6 99.5 99.5 99.5 99.5 99.5
Mpmv12 1 100 99.3 99 98.8 99.8
  2,3 100 99.7 99.5 99.2 99.7
  5 100 100 100 99.7 100
  6 99.8 99.5 99.5 99.5 99.5
Mpmv13 1 99.8 99.8 99.8 99.5 99.8
  2,3 99.5 99.5 99.5 99.2 99.7
  5 99.5 99.5 99.5 99.2 100
  6 100 100 100 100 100
  1. The use of boldface indicates that sequences with 100% identity to a reference were detected for all MLV target regions in a mouse. The use of italics indicates that more than one Mpmv sequence in a cluster was 100% identical. Mpmv reference sequences are those of Bamunusinghe et al. [4]. A dash indicates that for a target MLV region, the region is deleted in the reference sequence relative to other MLV sequences