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Table 3 Overrepresentation analysis revealed candidate-direct-target genes of Nr2e1

From: Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development

Gene name

No. of NR2E1 binding sites

No. of SOX9 binding sites

Lhx2

35

13

Ppp1r9a

30

2

Gap43

29

3

Myh10

23

2

Fezf2

20

3

Cux1

19

9

Ppp1r9b

19

1

Epha4

18

4

Nr2e1

17

4

Slc1a3

17

1

Atrx

15

2

Neurod6

14

4

Rgma

14

3

Mtap1b

13

5

Kif5c

13

3

Bzw2

13

2

Cntn2

12

1

Tbr1

11

1

Dpysl2

10

2

Msx1

9

3

Efnb2

9

2

Neurod1

9

2

Rufy3

9

2

Apc

9

1

Notch1

8

3

Hes6

8

2

Racgap1

8

2

Edg1 (S1pr1)

7

1

Id3

6

3

Otx1

6

3

Elavl3

6

1

Pfn1

5

1

Neurog2

4

1

Sema4g

4

1

Tubb3

3

2

Dner

3

1

Mtpn

3

1

Sept4

3

1

Hes5

2

2

Sox11

2

1