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Table 2 Estimation of paralogues content in the coho salmon transcriptome

From: RNAseq analysis of fast skeletal muscle in restriction-fed transgenic coho salmon (Oncorhynchus kisutch): an experimental model uncoupling the growth hormone and nutritional signals regulating growth

S. salar paralogue

Coho salmon contig

E-value

Id (%)

Alignment (AA)

igfbp1a1

comp120142_c0_seq3

0

95

807

igfbp1a2

n/a

n/a

n/a

n/a

igfbp1b1

n/a

n/a

n/a

n/a

igfbp1b2

n/a

n/a

n/a

n/a

igfbp2a

n/a

n/a

n/a

n/a

igfbp2b1

n/a

n/a

n/a

n/a

igfbp2b2

comp132077_c2_seq30

0.24

100

20

igfbp3a1

comp125786_c0_seq1

0

96

889

igfbp3a2

n/a

n/a

n/a

n/a

igfbp3b1

n/a

n/a

n/a

n/a

igfbp3b2

comp712690_c0_seq1

1.00E-154

96

324

igfbp4

n/a

n/a

n/a

n/a

igfbp5a

n/a

n/a

n/a

n/a

igfbp5b1

comp126977_c0_seq9

0

96

807

igfbp5b2

n/a

n/a

n/a

n/a

igfbp6a1

n/a

n/a

n/a

n/a

igfbp6a2

n/a

n/a

n/a

n/a

igfbp6b1

n/a

n/a

n/a

n/a

igfbp 6b2

comp130388_c0_seq9

0

98

609

akirin 1(1a)

comp126876_c0_seq6

0

96

638

akirin 1(1b)

comp126876_c0_seq2

0

96

655

akirin 1(2a)

comp128245_c1_seq9

0

95

690

akirin 1(2b)

comp128245_c1_seq10

0

98

592

akirin 2(1a)

n/a

n/a

n/a

n/a

akirin 2(1b)

comp127034_c0_seq3

0

98

472

akirin 2(2a)

n/a

n/a

n/a

n/a

akirin 2(2b)

comp126525_c1_seq7

0

98

546

hsp90aa1.3

comp132154_c0_seq29

0

92

1386

hsp90aa1.4

comp132154_c0_seq71

0

95

1281

hsp90aa1.1

n/a

n/a

n/a

n/a

hsp90aa1.2

n/a

n/a

n/a

n/a

hsp90b1

comp122350_c0_seq5

0

97

619

hsp90b2

 n/a

 n/a

n/a 

 n/a

aqp8

comp132382_c1_seq19

1.00E-28

95

82

aqp8aa1

comp104094_c0_seq1

0

91

796

aqp8ab

n/a

n/a

n/a

n/a

aqp8b

comp450295_c0_seq1

0.87

100

19

myod1

comp122414_c0_seq4

0

96

986

myod2

n/a

n/a

n/a

n/a

myo1c

comp131066_c1_seq17

0

98

859

  1. Id: percentage of identity at amino acid level between S.salar and O.kitsuch orthologues
  2. Alignment: Total number of amino acids successfully aligned during the tBLASTn between S.salar and O.kitsuch orthologues
  3. n/a: Paralogues not identified in the transcriptome