|
LIMP #
|
Centera
|
Structureb
|
Total length (nt)
|
Stem length (bp)
|
Palindromic regionc(nt)
|
Imperfect genomic readsd
|
ΔG RNA hairpin (kcal.mol−1)e
|
transcriptome coveragef
|
|---|
|
1
|
33
|
5;+;4
|
52
|
20
|
52
|
0;6
|
−30.60
|
low (19)
|
|
2
|
2152
|
8;+;6
|
77
|
30
|
77
|
18;5
|
−49.70
|
NO (2)
|
|
3
|
7742
|
7;+;8
|
82
|
35
|
82
|
0;11
|
−63.00
|
NO (1)
|
|
4
|
10697
|
8;-;7
|
82
|
35
|
82
|
0;6
|
−61.20
|
NO (0)
|
|
5
|
14093
|
8;-;9
|
92
|
40
|
96
|
9;7
|
−77.60
|
NO (1)
|
|
6
|
15481
|
7;+;10
|
92
|
35
|
92
|
1;2
|
−66.60
|
NO (1)
|
|
7
|
16799
|
10;-;9
|
102
|
45
|
102
|
4;12
|
−80.00
|
NO (1)
|
|
8
|
17732
|
8;+;9
|
92
|
40
|
96
|
20;5
|
−76.80
|
NO (0)
|
|
9
|
18115
|
7;-;8
|
82
|
35
|
86
|
12;0
|
−68.20
|
NO (0)
|
|
10
|
23885
|
3;-;2
|
32
|
10
|
74
|
1;0
|
−55.20
|
normal (145)
|
|
11
|
29424
|
3;-;9
|
67
|
15
|
67
|
1;6
|
−27.40
|
normal (47)
|
|
12
|
32075
|
11;+;13
|
127
|
55
|
127
|
27;12
|
−101.70
|
NO (1)
|
|
13
|
43731
|
3;+;3
|
37
|
15
|
37
|
4;0
|
−21.70
|
normal (83)
|
|
14
|
50059
|
12;-;8
|
107
|
40
|
107
|
1;7
|
−70.40
|
NO (5)
|
|
15
|
55976
|
4;+;13
|
92
|
20
|
96
|
8;10
|
−48.00
|
low (13)
|
|
16
|
59523
|
5;-;5
|
57
|
25
|
57
|
0;0
|
−41.30
|
low (18)
|
|
17
|
60233
|
8;-;7
|
82
|
35
|
82
|
0;1
|
−61.20
|
NO (1)
|
|
18
|
66788
|
7;-;9
|
87
|
35
|
87
|
4;9
|
−63.10
|
NO (1)
|
|
19
|
67694
|
9;+;8
|
92
|
40
|
92
|
14;6
|
−68.20
|
NO (1)
|
|
average:
| | |
80.7
|
31.8
|
83.7
| |
−59.6
| |
|
total:
| | |
1533
|
605
|
1591
|
124;105
| | |
-
aposition of first nt of first T-unit
-
bnumber of A-units; type of loop; number of T-units
-
cincluding additional nucleotides extending the stem, see Fig. 2a
-
dreads showing a change in the number of A-units; of T-units
-
eincluding extension of palindrome for #5, 8, 9 and 10
-
fcoverage level (number of reads at position of lowest coverage; 5 or below is considered an interruption)
