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Table 2 Features of LIMP repeats identified in the L. incisa mitochondrial genome

From: The complete mitochondrial genome sequence of the green microalga Lobosphaera (Parietochloris) incisa reveals a new type of palindromic repetitive repeat

LIMP # Centera Structureb Total length (nt) Stem length (bp) Palindromic regionc(nt) Imperfect genomic readsd ΔG RNA hairpin (kcal.mol−1)e transcriptome coveragef
1 33 5;+;4 52 20 52 0;6 −30.60 low (19)
2 2152 8;+;6 77 30 77 18;5 −49.70 NO (2)
3 7742 7;+;8 82 35 82 0;11 −63.00 NO (1)
4 10697 8;-;7 82 35 82 0;6 −61.20 NO (0)
5 14093 8;-;9 92 40 96 9;7 −77.60 NO (1)
6 15481 7;+;10 92 35 92 1;2 −66.60 NO (1)
7 16799 10;-;9 102 45 102 4;12 −80.00 NO (1)
8 17732 8;+;9 92 40 96 20;5 −76.80 NO (0)
9 18115 7;-;8 82 35 86 12;0 −68.20 NO (0)
10 23885 3;-;2 32 10 74 1;0 −55.20 normal (145)
11 29424 3;-;9 67 15 67 1;6 −27.40 normal (47)
12 32075 11;+;13 127 55 127 27;12 −101.70 NO (1)
13 43731 3;+;3 37 15 37 4;0 −21.70 normal (83)
14 50059 12;-;8 107 40 107 1;7 −70.40 NO (5)
15 55976 4;+;13 92 20 96 8;10 −48.00 low (13)
16 59523 5;-;5 57 25 57 0;0 −41.30 low (18)
17 60233 8;-;7 82 35 82 0;1 −61.20 NO (1)
18 66788 7;-;9 87 35 87 4;9 −63.10 NO (1)
19 67694 9;+;8 92 40 92 14;6 −68.20 NO (1)
average:    80.7 31.8 83.7   −59.6  
total:    1533 605 1591 124;105   
  1. aposition of first nt of first T-unit
  2. bnumber of A-units; type of loop; number of T-units
  3. cincluding additional nucleotides extending the stem, see Fig. 2a
  4. dreads showing a change in the number of A-units; of T-units
  5. eincluding extension of palindrome for #5, 8, 9 and 10
  6. fcoverage level (number of reads at position of lowest coverage; 5 or below is considered an interruption)