Table 4 Sanger sequencing validation comparison on variant subsets of TargetSeq-Proton and SureSelect-HiSeq data calls
From: Comparison and evaluation of two exome capture kits and sequencing platforms for variant calling
| SureSelect-HiSeq-specific | TargetSeq-Proton-specific | Concordant | ||||
|---|---|---|---|---|---|---|
| 1-bp InDels | SNPs | 1-bp InDels | SNPs | 1-bp InDels | SNPs | |
| Validated true | 89.6 %(60) | 88.3 %(53) | 15.8 %(6) | 60.0 %(21) | 100.0 %(47) | 91.5 %(65) |
| Validated false | 10.4 %(7) | 11.7 %(7) | 84.2 %(32) | 40.0 %(14) | 0.0 %(0) | 8.2 %(6) |
