Skip to main content

Table 2 Summary of the assembly results

From: RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress

 

Transcript length interval

Assembly

 

200-500 bp

500-1kbp

1 k-2kbp

>2kbp

total

Min Length

Mean Length

Median Length

Max Length

N50

N90

transcripts

89,217 (35.6 %)

56,313 (22.5 %)

65,276 (26.1 %)

39,553 (15.8 %)

250,359 (100 %)

201

1115

787

16458

1742

499

unigenes

59,368 (57.5 %)

20,295 (19.6 %)

15,256 (14.8 %)

8,405 (8.1 %)

103,324 (100 %)

201

764

414

16458

1311

294

  1. The N50 value is defined as the contig length where half the assembly is represented by contigs of this size or longer; the N90 value is defined as the contig length where ninety percent of the assembly is represented by contigs of this size or longer
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us