Genetic characteristics of soybean resistance to HG type 0 and HG type 1.2.3.5.7 of the cyst nematode analyzed by genome-wide association mapping

Table 1 Peak SNP associated with resistance to the two Hg Types (race 3 and race 4) identified by GWAS and evaluation of beneficial alleles

SNP	Chromosome	Physical position	-log10(P)	Minor Allele Frequency	R² of Model with SNP (%)	Resistant allele	Susceptible alleles	Average FI of accessions with resistant allele	Average FI of accessions with susceptible allele	Average FI of population	Hg Type¹
rs8009636	Gm01	8009636	5.87	0.07	10.58	A	C	51.44	90.14	58.23	race 4
rs21804864	Gm02	21804864	6.54	0.04	6.21	T	C	24	53.22	53.14	race 3
rs949365	Gm04	949365	6.25	0.05	7.49	A	C	12	61.56	53.14	race 3
rs46050545	Gm04	46050545	7.2	0.11	12.93	A	T	17	123.34	53.14	race 3
rs26781135	Gm05	26781135	7.21	0.04	9.78	C	T	53.58	145.55	58.23	race 4
rs33843704	Gm05	33843704	8.21	0.08	7.4	T	C	14	95.36	53.14	race 3
rs36404700	Gm07	36404700	10.7	0.13	10.03	G	A	13	92.45	53.14	race 3
rs8050006	Gm08	8050006	6.57	0.1	10.4	C	A	18	56.33	53.14	race 3
rs8050006	Gm08	8050006	9.11	0.16	14.29	C	A	7.53	56	53.14	race 4
rs41643371	Gm08	41643371	5.58	0.01	8.77	C	G	54.13	98.22	58.23	race 4
rs34608484	Gm09	34608484	7.55	0.05	9.26	C	A	20	78.26	53.14	race 3
rs33488383	Gm11	33488383	7.43	0.04	10.73	C	A	20	86.75	53.14	race 3
rs30581306	Gm14	30581306	7.76	0.05	12.62	C	A	50.54	115.44	58.23	race 4
rs43617172	Gm14	43617172	8.07	0.1	10.65	C	T	12	84.22	53.14	race 3
rs33704130	Gm16	33704130	8.41	0.07	11.66	A	C	24	114	53.14	race 3
rs33704130	Gm16	33704130	6.47	0.07	12.66	A	C	53	124.14	58.23	race 4
rs17238884	Gm17	17238884	7.19	0.42	13.53	T	A	53.65	87.47	58.23	race 4
rs1643660	Gm18	1643660	7.13	0.1	15.4	G	C	18	25	53.14	race 3
rs2085816	Gm20	2085816	6.1	0.48	6.85	G	A	23	87	53.14	race 3

ISSN: 1471-2164