ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass)

Gardin, Jeanne Aude Christiane; Gouzy, Jérôme; Carrère, Sébastien; Délye, Christophe

doi:10.1186/s12864-015-1804-x

Table 3 ALOMYbase most probable homologs of published NTSR genes or candidate genes identified in grasses and their RNA-Seq expression patterns

From: ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass)

Gene^a	Accession (GenBank)	Reference	Species	Herbicide mode of action^b	Most probable ALOMYbase homolog
	Accession (GenBank)				Accession	E-value	Expression pattern
							In the resistant pool	In the sensitive pool
AmGSTF1 (glutathione-S-transferase)	AJ010454	[13, 14]	A. myosuroides	ACCase	Alomy081323	1.12E-87	Up over the treated modalities	Up over the treated modalities
Esterase	AJ698940	[12]	A. myosuroides	ACCase	Alomy016613	5.18E-140	Up until 36HAT, then down	Up until 36HAT, then down
CYP72A	GAYU01000008	[15]	Lolium rigidum	ACCase	Alomy031474	7.90E-179	Up over the treated modalities	Up over the treated modalities
CYP72A	GAYU01000010	[15]	Lolium rigidum	ACCase	Alomy009176	2.51E-283	Up over the treated modalities	Up over the treated modalities
Nitronate monooxygenase	GAYU01000016	[15]	Lolium rigidum	ACCase	Alomy009031	4.99E-76	Up over the treated modalities	Up over the treated modalities
Glycosyl-transferase	GAYU01000013	[15]	Lolium rigidum	ACCase	Alomy080565	5.28E-101	Up over the treated modalities	Up over the treated modalities
CYP72A254	AB755796	[16]	Echinochloa phyllopogon	ALS	Alomy010097	1.94E-245	Stable	Up over the treated modalities
CYP72A31	Os01g060220^c	[17]	Oryza sativa	ALS	Alomy010097	3.26E-164	Stable	Up over the treated modalities
GTA (glycosyl-transferase)	LOLSS006751^d	[19]	Lolium sp.	ALS	Alomy047057	1.30E-119	Up over the treated modalities	Up over the treated modalities
GSTA (glutathione-S-transferase)	LOLSS067288^d	[19]	Lolium sp.	ALS	Alomy098098	5.52E-47	Up over the treated modalities	Up over the treated modalities
CYP72A	LOLSS002187^d	[19]	Lolium sp.	ALS	Alomy016824	0.00	Down until 24HAT, then up	Stable
CYP81B1	LOLSS010577^d	[19]	Lolium sp.	ALS	Alomy007987	0.00	Stable but a peak at 24HAT	Stable

^aCYP, cytochrome P450
^bGene or candidate gene conferring NTSR to herbicides inhibiting acetyl-coenzyme A carboxylase (ACCase) or acetolactate synthase (ALS)
^cAccession in the Rice Genome Annotation Project database, http://rice.plantbiology.msu.edu/
^dAccession in LOLbase [19]

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ISSN: 1471-2164

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