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Table 2 Oligonucleotides used in this study

From: The impact of chromatin remodelling on cellulase expression in Trichoderma reesei

Name

Sequence (5′ - 3′)

Usage

RG53

GAATTCAGATC

ivFP, oligo-short

RG54

GCGGTGACCCGGGAGATCTGAATTC

ivFP, oligo-long

RG83

[6-FAM]CCTTTGGGTGTACATGTTTGTGCTCCGG

ivFP, cbh1oligo3fw

RG84

[6-FAM]GGAGAGTGCAGGCCGACTGAGC

ivFP, cbh1oligo3rev

RG89

[6-FAM]GTAGAGGCATGTTGTGAATCTGTGTCGGG

ivFP, cbh1oligo3fw

RG90

[6-FAM]GGTTGTATGCAAAACGCTCCGAGTCAGAC

ivFP, cbh1oligo3rev

actfw

TGAGAGCGGTGGTATCCACG

qPCR

actrev

GGTACCACCAGACATGACAATGTTG

sar1fw

TGGATCGTCAACTGGTTCTACGA

sar1rev

GCATGTGTAGCAACGTGGTCTTT

cbh1f

GATGATGACTACGCCAACATGCTG

cbh1r

ACGGCACCGGGTGTGG

cbh2f

CTATGCCGGACAGTTTGTGGTG

cbh2r

GTCAGGCTCAATAACCAGGAGG

xyn1f

CAGCTATTCGCCTTCCAACAC

xyn1r

CAAAGTTGATGGGAGCAGAAG

taqxyn2f

GGTCCAACTCGGGCAACTTT

taqxyn2r

CCGAGAAGTTGATGACCTTGTTC

epiactinTr_f

CTTCCCTCCTTTCCTCCCCCTCCAC

act CHART, region −226 to +24

epiactinTr_r

GCGACAGGTGCACGTACCCTCCATT

episar1Tr_f

GTCAGGAAATGCCGCACAAGCAAGA

sar1 CHART, region −490 to −224

episar1Tr_r

TGTGTTTTACCGCCTTGGCCTTTGG

epicbh1_1Tr_f

AAGGGAAACCACCGATAGCAGTGTC

cbh1 CHART, region −902 to −610

epicbh1_1Tr_r

TTTCACTTCACCGGAACAAACAAGC

epicbh1_2Tr_f

GGATCGAACACACTGCTGCCTTTAC

cbh1 CHART, region −301 to −27

epicbh1_2Tr_r

GGTTTCTGTGCCTCAAAAGATGGTG

epicbh2_1Tr_f

CGGATCTAGGGCAGACTGGGCATTG

cbh2 CHART, region −587 to −338

epicbh2_1Tr_r

GTGTAGTGTTGCGCTGCACCCTGAG

epicbh2_2Tr_f

TGCAGCGCAACACTACACGCAACAT

cbh2 CHART, region −355 to −62

epicbh2_2Tr_r

TGCGCCTCATACAGGGTCACAGTCC

epixyn1_1Tr_f

GCACTCCAAGGCCTTCTCCTGTACT

xyn1 CHART, region −577 to −278

epixyn1_1Tr_r

TAGATTGAACGCCACCCGCAATATC

epixyn1_3Tr_f

GTCGATATTGCGGGTGGCGTTCAAT

xyn1 CHART, region −306 to −10

epixyn1_3Tr_r

TTTGTGCGTGTTTTCCTTGAAGTCG

epixyn2_1Tr_f

GTGCCGATGAGACGCTGCTGAGAAA

xyn2 CHART, region −527 to −252

epixyn2_1Tr_r

GATATTGCGCCTTGCAACACCATCG

epixyn2_2Tr_f

CTCGAGACGGCTGAGACAGCAGCAT

xyn2 CHART, region −311 to −38

epixyn2_2Tr_r

TGTCTTTTGGGCTTGGAGGGGTTGT