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Table 2 Details of loci governing SCN resistance in soybean identified by genome-wide association study performed using a set of diverse soybean plant introductions (PIs) genotyped with the SoySNP50K iSelect BeadChip

From: Genetic architecture of cyst nematode resistance revealed by genome-wide association study in soybean

Chromosome no. MSS position MSS P-value R2* R2** Total SNPs Significant locus
Start End
1 51957108 1.85E-05 0.47 0.50 3 50726668 51960351
2 13017725 3.29E-05 0.47 0.49 1 13663384 13663384
4 7627278 4.94E-05 0.47 0.49 1 7627278 7627278
7 36560926 2.42E-06 0.47 0.50 5 36480188 36560926
7 43095766 2.63E-06 0.47 0.50 4 43093289 43095766
8 8607787 6.36E-05 0.47 0.49 2 7571195 8607787
10 43812212 3.29E-07 0.47 0.51 2 40113201 43812212
11 10174912 6.88E-05 0.47 0.49 3 10174912 14827458
12 37554204 5.86E-05 0.47 0.49 2 37537049 37554204
13 6988591 2.85E-05 0.47 0.49 8 29081 105760
13 31806761 5.52E-06 0.47 0.50 2 31806761 31828223
14 3172907 9.06E-05 0.47 0.49 1 3172907 3172907
15 10320348 3.93E-05 0.47 0.49 1 10320348 10320348
18 1286527 5.46E-05 0.47 0.49 2 1286527 6646067
19 39002612 1.18E-05 0.47 0.50 3 37531417 46497770
20 33218932 0.0001 0.47 0.49 1 33218932 33218932
  1. Chr. – Chromosome, MSS – Most significant SNP, *– R square of model without SNP, **– R square of model with SNP