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Table 2 Details of loci governing SCN resistance in soybean identified by genome-wide association study performed using a set of diverse soybean plant introductions (PIs) genotyped with the SoySNP50K iSelect BeadChip

From: Genetic architecture of cyst nematode resistance revealed by genome-wide association study in soybean

Chromosome no.

MSS position

MSS P-value

R2*

R2**

Total SNPs

Significant locus

Start

End

1

51957108

1.85E-05

0.47

0.50

3

50726668

51960351

2

13017725

3.29E-05

0.47

0.49

1

13663384

13663384

4

7627278

4.94E-05

0.47

0.49

1

7627278

7627278

7

36560926

2.42E-06

0.47

0.50

5

36480188

36560926

7

43095766

2.63E-06

0.47

0.50

4

43093289

43095766

8

8607787

6.36E-05

0.47

0.49

2

7571195

8607787

10

43812212

3.29E-07

0.47

0.51

2

40113201

43812212

11

10174912

6.88E-05

0.47

0.49

3

10174912

14827458

12

37554204

5.86E-05

0.47

0.49

2

37537049

37554204

13

6988591

2.85E-05

0.47

0.49

8

29081

105760

13

31806761

5.52E-06

0.47

0.50

2

31806761

31828223

14

3172907

9.06E-05

0.47

0.49

1

3172907

3172907

15

10320348

3.93E-05

0.47

0.49

1

10320348

10320348

18

1286527

5.46E-05

0.47

0.49

2

1286527

6646067

19

39002612

1.18E-05

0.47

0.50

3

37531417

46497770

20

33218932

0.0001

0.47

0.49

1

33218932

33218932

  1. Chr. – Chromosome, MSS – Most significant SNP, *– R square of model without SNP, **– R square of model with SNP