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Table 1 Summary of sequencing and assembly data

From: RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

Sequencing statistics

Hemocytes

Mantle

Muscle

Gill

Millions of raw reads

112.706

111.322

113.045

56.244

Millions of clean reads

107.386

106.060

107.127

53.335

Total Megabases

9,665

9,545

9,641

4,800

% GC content

38.99 %

38.32 %

38.28 %

37.54 %

Assembly statistics

    

Number of contigs

261,332

428,939

313,554

238,650

Tissue unigenes

107,045

131,935

120,572

120,254

 

All

Total number of transcripts

151,320

Average transcript length

570

N50 transcript length

774

Range of transcript lengths

200 – 17,690

Number of transcripts < 500pb

104,757

Number of transcripts > 500pb

46,563

Annotation statistics

 

Annotated transcripts by nt

14,207 (9.4 %)

Annotated transcripts by nr

45,182 (29.8 %)

Annotated transcripts by SwissProt

36,656 (24.2 %)

Annotated transcripts by KEGG

31,144 (20.6 %)

Annotated transcripts by COG

14,503 (9.6 %)

TOTAL annotated transcripts

50,998 (33.7 %)

Transcripts with GO terms

18,899 (12.5 %)