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Table 2 Counts of two SNP haplotypes. Counts of two SNP haplotypes with 1–4 alleles for chromosome 21 before and after filtering to remove the loci with more than two 2 SNP haplotypes. Removing any pair of adjacent loci creates a new two SNP haplotype. But the efficacy of the filtering is indicated by the 90 % reduction in loci with > 2 haplotypes after filtering

From: A simple procedure for directly obtaining haplotype sequences of diploid genomes

Allele Count Count (%) loci before filtering Count (%) loci after filtering
1 26,232 (40) 25,489 (45)
2 36,746 (56) 30,789 (55)
3 2830 (4) 214 (0)
4 18 (0) 0 (0)