Table 4 Descriptive statistics for scaffolds
From: A simple procedure for directly obtaining haplotype sequences of diploid genomes
Sample Set1 | Mean Scaffold Length (kbp) | N50 Scaffold Length (kbp) | Max scaffold length (kbp) | Scaffold Coverage of Genome | % Scaffolds deleted for heterozygotes | % Consistency | % Consistency (Switch) | % Genome under (informative) Scaffolds | % Genes within Scaffolds | % Pairs Missense SNP phased |
|---|---|---|---|---|---|---|---|---|---|---|
Angus Steer CM | 16 | 27 | 421 | 8.1 | 2.2 | 99.10 | 99.70 | 98 (89) | 65 | 99.96 |
Angus Steer TC | 33 | 46 | 837 | 6.2 | 6.3 | 98.98 | 99.58 | 97 (93) | 75 | 99.96 |
EAZ Cells CM | 29 | 73 | 791 | 1.2 | 0.2 | 97.72 | 99.12 | 91 (56) | 67 | 99.91 |
EAZ Cells TC | 81 | 133 | 1711 | 1.7 | 1.7 | 95.98 | 98.55 | 89 (70) | 75 | 99.91 |
EAZ Fosmids CM | 26 | 36 | 791 | 11.5 | 3.3 | 97.57 | 99.51 | 99 (89) | 76 | 99.97 |
EAZ Fosmids TC | 43 | 41 | 1527 | 12.5 | 4.9 | 95.01 | 98.64 | 100 (95) | 82 | 99.97 |
Angus Bull CM | 55 | 80 | 1791 | 7.5 | 11.6 | 99.30 | 99.92 | 41 (41) | 10 | 99.98 |
Angus Bull TC | 180 | 413 | 52,056 | 6.4 | 5.5 | 95.38 | 98.87 | 96 (82) | 70 | 99.98 |