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Table 4 Descriptive statistics for scaffolds

From: A simple procedure for directly obtaining haplotype sequences of diploid genomes

Sample Set1 Mean Scaffold Length (kbp) N50 Scaffold Length (kbp) Max scaffold length (kbp) Scaffold Coverage of Genome % Scaffolds deleted for heterozygotes % Consistency % Consistency (Switch) % Genome under (informative) Scaffolds % Genes within Scaffolds % Pairs Missense SNP phased
Angus Steer CM 16 27 421 8.1 2.2 99.10 99.70 98 (89) 65 99.96
Angus Steer TC 33 46 837 6.2 6.3 98.98 99.58 97 (93) 75 99.96
EAZ Cells CM 29 73 791 1.2 0.2 97.72 99.12 91 (56) 67 99.91
EAZ Cells TC 81 133 1711 1.7 1.7 95.98 98.55 89 (70) 75 99.91
EAZ Fosmids CM 26 36 791 11.5 3.3 97.57 99.51 99 (89) 76 99.97
EAZ Fosmids TC 43 41 1527 12.5 4.9 95.01 98.64 100 (95) 82 99.97
Angus Bull CM 55 80 1791 7.5 11.6 99.30 99.92 41 (41) 10 99.98
Angus Bull TC 180 413 52,056 6.4 5.5 95.38 98.87 96 (82) 70 99.98
  1. 1 CM = scaffolds constructed using ContigMetrics with a 1000 bp gap permitted between contigs; TC TargetCut in Samtools