Table 6 Descriptive statistics for libraries and contigs
From: A simple procedure for directly obtaining haplotype sequences of diploid genomes
Libraries | Contigs | ||||||||
|---|---|---|---|---|---|---|---|---|---|
Sample | Sequence type | Million reads /library | Gb mapped data/library | Count Libraries | Mean contig length (bp) | % Genome covered/library | N50 Contig length (bp) | Read depth over contigs | Contig coverage of genome |
Angus Steer | SOLiD 1 x 75 bp | 34.5 | 2.6 | 31 | 165 | 14.2 | 359 | 7.7 | 4.2 |
EAZ Cells | HiSeq 2 × 100 bp | 39.2 | 2.6 | 21 | 796 | 5.6 | 3369 | 32.9 | 1.9 |
EAZ Fosmids | HiSeq 2 × 100 bp | 28.5 | 2 | 47 | 1288 | 21.8 | 3209 | 4.6 | 10.7 |
Angus Bull | SOLiD 1 × 75 bp | 166.011 | 9.1 | 8 | 198 | 50 | 479 | 5.6 | 4 |